Lagopus muta (rock ptarmigan): 125685794
Help
Entry
125685794 CDS
T09141
Symbol
SETDB1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut00310
Lysine degradation
lmut01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
125685794 (SETDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lmut03036
]
125685794 (SETDB1)
Enzymes [BR:
lmut01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
125685794 (SETDB1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
125685794 (SETDB1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
125685794 (SETDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
SET
MBD
Pre-SET
Chromo_MORC2_6th
DUF4537
Motif
Other DBs
NCBI-GeneID:
125685794
NCBI-ProteinID:
XP_048785161
LinkDB
All DBs
Position
29:complement(1235760..1251091)
Genome browser
AA seq
1279 aa
AA seq
DB search
MDCQDIKELQKEVMEEMGISMEELEDIINKELEKSEYVKQKKQQLEELEVCVKQKEEEVA
HVDRLFDDAWRDFHKCEMLVKDLYSKLGLDYRESSSEEEDLAAKPTEVIEIPDDDDDDIM
SIDSGWKNSDSSPKVPKDQTLLREAMAAMRRSAQDVQKFMDAVHRRTNTAQEAVRDAQTP
QQAPGALQSAGPAVGVGDLSNDGDLKVGMRILGKKRTKTWHKGTLIAIQTVGAGKKYKVK
FDNKGKSLLSGNHIAYDYHPSPDKHYVGSRVVAKYKDGDQVWLYAGIVAETPNVKNKDRF
LIFFDDGYASYVKEWELYPVCRPLKKTWEDIEDVSCRDFIEEYISAYPNRPMVLLKSGQL
IKTEWEGTWWKSRVEEVDSSLVKILFLEALAVDAVSVAFSLLQDDKRCEWIYRGSTRLEP
MFSMKTSTASTQEKKQGGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASL
AAQPPSPPPSEMECSDGLLAQSRKQVAKKSTSFRPGSGQSSPSPPVLNDAPGRAAAAQQH
RSFPSGPAGSVQPFHGMLDRVPNEPSYRAPLEKLFYLPHVCSYACLSRVRPLRSDQYRSR
NPLLIPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRSMAEIERYLFETDCDFLFLEM
FCLDPYVLVDRKFQPYKPFYYIADITRGREDVPLSCVNEIDGTPPPQVAYSKERIPGKGV
FINTGWEFLVGCDCRDGCRDKSKCACHQLTVQATGCTPGGQINPNSGYQHKRLEECLPTG
VYECNKRCKCNVNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKIL
TDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAKCSSDSSGVDLKDDEEDNTGTEE
QEESNEDSSDDNFCKDEGFNASSVWRSYATRRQTRGQKENGLSETASKDSGLTPQVGHDE
AAAAASCKLPVSEETSKNKVASWLSSNSVSDSFQDNDSTSSFKMSEGGEAKGCRADAAPG
GAEGEAKAPRKDEPEDSSKVPGLSDLGRLYGYNPSPPKLEGLRRPTSKTALLQSRRHSGP
LQPPAEDVLTLSSSTDSDGDNGPKVEGQPQGAANDSDDIQTISSGSEEEEGDEKKNPCGS
GPMKRQVAVKSTRGFALKSTHGIAIKSTNMAAAEKGDSAPVCRTTRQFYDGEESCYIIDA
KLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSV
EGKELLCCCGAIECRGRLL
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggattgccaggacatcaaagagctgcaaaaagaagtgatggaggagatgggaatctcc
atggaggagctggaggacatcatcaacaaggagctggagaagtctgagtacgtgaagcag
aagaagcagcagctggaggagctggaggtgtgtgtgaagcagaaggaagaggaggtggcg
catgtcgatcgcctcttcgatgatgcttggagagactttcacaaatgtgagatgttggtg
aaggatctgtactccaaactgggcctggattaccgtgagagcagctctgaggaggaggac
ttggctgccaaacccacagaagtgattgagatcccagatgatgacgacgacgacatcatg
agtattgattcgggctggaagaacagcgatagcagtcccaaggttcccaaggatcagacc
ctgctgagggaagccatggcagcaatgaggaggtcggcccaggacgttcagaagtttatg
gatgctgtgcacaggagaacaaacactgcccaggaggcagtgagagatgcacaaacccct
cagcaggcgcctggtgctctgcagtctgctggaccggccgtgggggtgggcgacctcagc
aacgatggcgatctgaaggtgggcatgaggatcctgggcaagaagagaaccaaaacgtgg
cacaaagggactctgatcgccatccagacggtcggtgctgggaagaagtacaaagtgaag
ttcgacaacaaggggaagagtttgctgtctggcaatcacattgcttacgactatcacccc
tccccagacaaacactacgttgggagcagagttgtggcaaagtacaaagatggggatcag
gtctggctgtatgctggcatcgtggctgaaacaccaaacgtgaagaacaaagacaggttc
ttgatcttctttgacgatggctacgcttcgtacgtcaaggagtgggagctgtacccggtc
tgcaggccgcttaagaagacgtgggaggacatagaggacgtgtcgtgccgggacttcatt
gaggagtacatcagtgcctaccccaaccgccccatggtgctgctgaagagcggccagctg
atcaaaaccgagtgggaggggacctggtggaaatccagggtggaggaggtggacagcagt
ctggtcaaaatcctcttcctggaagctcttgctgtagatgctgtgagtgttgcgttctcc
ttgctgcaggatgacaaacgctgcgagtggatttaccgcggatccacgcgcctcgagccc
atgttcagcatgaaaacctccactgcctccacccaggaaaagaagcagggtgggcaggcg
aggactcggcccaatgttggcgctgtgcggagcaaaggccccgtggtgcagtacacacag
gatctgactggagctgggacgcagtacaaacccctggagcagatgcaggcggcctcgctg
gcagcgcagcccccctccccgccgccctctgagatggagtgctctgacggcctgctggcc
cagtcgaggaagcaggtggccaagaagagcacatccttccggcccggctcggggcagtcg
tcgccttcgccgcccgtgctgaacgacgcgccaggaagggcggctgcagcccagcagcat
cgcagcttcccctccggtccggccggctcagtgcagcccttccacgggatgctggaccgg
gtgcccaacgagccgtcgtaccgcgcgccgctggagaagctcttctacctcccccacgtc
tgcagctacgcctgcctgtcccgcgtgcggcccctgcgcagtgaccagtaccgcagccgc
aacccgctgctcatccccctgctctacgacttcaggaggatgacggcgcgccgcagggtg
aaccgcaagatgggcttccatgtcatctacaagacgccgtgcgggctctgcctgcgcagc
atggccgagatcgagcgctacctcttcgagaccgactgcgacttcctcttcctggagatg
ttctgcctggatccctacgtcctggtggaccgcaaattccagccctacaagcccttctat
tacatcgccgacatcaccaggggccgcgaggacgtgccgctgtcctgcgtcaacgagatc
gacggcacgccgccgccgcaggtggcctacagcaaggagcgcatccccggcaagggggtc
ttcatcaacacgggctgggagttcctggtgggctgcgactgcagggacggctgcagggac
aaatccaagtgcgcctgtcaccagctgacggtccaagcaactggctgcaccccggggggg
cagatcaaccccaactcggggtaccagcacaagaggctggaggagtgcctcccaactggg
gtttatgagtgtaacaagaggtgcaaatgcaacgtcaacatgtgcaccaaccgcctggtg
cagcacgggctgcaggtcaggctgcagctgttcaagactcagaacaagggctggggcatc
cgctgcctcgatgacatcgccaagggctccttcgtctgcatctacgcagggaaaatcctc
acggatgacttcgccgacaaagagggcttggagatgggggacgagtactttgcaaacctg
gatcacatcgagagcgtggagaacttcaaggagggctacgagagcgacgccaagtgctcg
tctgacagcagcggggtggacctgaaggacgacgaggaggacaacacgggcacggaggag
caggaggagtccaacgaggacagctccgatgacaacttctgcaaggacgagggcttcaat
gccagctcggtgtggcgcagctacgccacgaggcgacaaacccgcgggcagaaggagaac
ggcctctcggaaacggcctccaaggactcggggctcacgccgcaggtcggccacgatgag
gctgcggcagccgcctcctgcaagctgcccgtgtccgaggagacctccaagaacaaggtg
gcctcgtggctcagctccaacagcgtgtctgacagcttccaggacaacgacagcacctcg
tccttcaagatgagcgaaggaggggaggccaaaggctgcagggctgatgctgcgccgggg
ggcgcggagggagaggcgaaggcgccgaggaaggatgaacctgaagattcaagcaaagtc
ccggggctcagcgacctgggcaggctgtatggctacaaccccagcccccccaaactggag
gggctgcgcagacccaccagcaaaacggctctgctgcagagcaggcggcactcggggccc
ctgcagccccccgccgaggacgtgctgaccctgtccagcagcaccgacagcgacggggac
aacgggcccaaggtggaggggcagccccagggcgctgccaacgacagcgacgacatccag
accatttcatcgggctctgaggaggaggaaggggatgagaagaagaacccctgcggttca
gggcccatgaagaggcaggtggccgtgaaatccacgcggggcttcgccctgaaatccacc
cacggcatcgccatcaaatccaccaacatggcggcagccgagaagggcgacagcgctccg
gtctgcaggacgacgcggcagttctacgatggagaggagtcctgctacatcattgatgcc
aaactggaggggaacctgggccgctacctcaaccacagctgcagtcccaacctcttcgtg
cagaacgtttttgtggacacccacgacctgcgcttcccctgggtcgccttcttcgccagc
aagaggatccgggcgggcacagagctgacgtgggattacaactacgaggtgggcagcgtg
gagggcaaggagctgctgtgctgctgcggggccatcgagtgcagggggcggctgctctga
DBGET
integrated database retrieval system
