Lagopus muta (rock ptarmigan): 125688057
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Entry
125688057 CDS
T09141
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04115
p53 signaling pathway
lmut04210
Apoptosis
lmut05164
Influenza A
lmut05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
125688057 (APAF1)
04115 p53 signaling pathway
125688057 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
125688057 (APAF1)
05168 Herpes simplex virus 1 infection
125688057 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
NB-ARC
WD40_CDC20-Fz
APAF1_C
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
APAF-1-like_WHD
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
CARD
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_Vps41
CARD_2
eIF2A
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Beta-prop_DCAF12
WD40_like
PEP5_VPS11_N
Beta-prop_WDR11_2nd
Beta-prop_Nup120_160
AAA_16
AAA_22
Dark_WHD
Utp8_b_propeller
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125688057
NCBI-ProteinID:
XP_048789527
LinkDB
All DBs
Position
1:45960651..45987714
Genome browser
AA seq
1249 aa
AA seq
DB search
MDAKSRACLIRHRRALERDIKTSYIMDCMVSDQVLTLQEEEKVKQQNTQKERAAMLIDTL
LKKDNNAYRSFYNALLHEGYRDLAALLQDGIPVFSSGNGKHAVDEMTSYVKTTLCEGGVP
QRPVVFVTRPKLVDAIKQKLRSLGSDPGWVTVYGMAGCGKTVLTAEALRDHQLLEGYFPG
GVHWISVGKQDKAGLLIKLQNLCSRLEHDSTLSQRPPLNIEEAKDRLRLLMLRKYPRSLL
VLDDIWDSWVLKAFDNQCQVLITSRDRSVTDAVSGNKYEIHVESGLTHEKGLEVLALFVN
MKISELPEQANCIVRECKGSPLVISLIGALLRDFPSRWEYYLKQLQNKQFKRIRKSSSYD
YEALDEAMSISVEQLSNDLKDYYKDLSILPKDVKVPTKVLCVLWDMETEEVEDILQEFVN
KSLLFCDRNGNSFHYYLHDLQLDFLTEKNRNQLQELHKNIVNQYKRYYKLHVPVLSQEDC
MYWYNFLAYHMAGANMQKELRDLMFSLDWIKAKTELVGPAHLIHEYVEYSSVLDQKDSII
RENFQEFLSLNGHLLGRQPFPDITQLGLCQPETSEVYQQAKLRAQRETGTFYLEWINKKS
LKNLSRLVVRPHRDAVYHACFSRDRQRIASCGADKTLQVFKAESGERLLEISAHDDEILC
CTFSADDKYVATCSADKKVKIWNSITGKCLYIYEEHTEQVNCCQFNNRRGQYLLATCSDD
TFIKLWNLKDKYCRNTMFGHVNAVSHCRFSPNDDYIASCSTDGTVKLWDVHSANELKTIE
IKEFFRNADEQQDDVEVLVKCCSWSRSSDTILVVAKNKLLLFDVTTCNLLAQVVVSHHST
IQYCDFCAGDELVAVALSHCSVELWNIKSLSKVADCRGHMSWVHCVTFSSDGSLFLTSSE
DQTIRIWETNKVCKSSDAVLKSELDVVFHNGEVMILAIYNQKHIQLINGNTDSIIIQTEP
QESLICCCCLSEDLKFAAFGQENGAIKILQLLDGKVLMSREAYRTSVQHCRFTTDCRTLI
SSAHDAVIQVWNWQLNECVFLRGHKEAIKDFAFLENSKLLSWSFDGTVKVWNITTGITEK
DFACHRGAVLSCAISPDGSRFSSTSADKTAKIWSFESSSVLHELKGHEACVRCSAFSPSN
KLLATGDDKGDIRIWDILTGELLHFCSSVTVDEGEPTHGGWVTDLSFSPDSKMLVSSGGY
LKWWDVTTGESLQTFYTNGTNLKSIHVSPNFEVYVTVDNLGILYVLQKL
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgaagagtagagcgtgtttaattaggcatcgtcgggcactggagagagacatc
aaaacctcgtacattatggattgtatggtttctgaccaagtcctgacactgcaggaggag
gagaaagtgaaacaacagaatacacagaaggagcgagcagctatgctaatagatactctt
cttaagaaagacaataatgcatatagatctttttataatgcactgcttcatgaagggtac
agagatcttgctgcacttcttcaggatggcatccctgtcttctcctctgggaatggaaag
catgctgtggatgagatgacttcatatgttaagacaactctctgcgaaggaggtgtacca
cagagaccagttgtgtttgtcactcggccaaagctggtagatgctattaaacagaaactg
cgcagcttaggaagtgatccaggttgggtgacagtttatggaatggccggttgtggaaag
accgttttaacagcagaagctttaagggatcaccagctcttggaaggttattttccagga
ggagttcactggatctctgtgggaaaacaggacaaagctgggctcctcataaaactacag
aatctttgtagtagattagagcatgactctactctttcacagagaccaccacttaacatc
gaggaggccaaagaccgccttcgtttgctgatgctgcgcaaatacccgaggtctcttttg
gtcctggatgatatttgggattcctgggtgttaaaagcatttgataatcaatgtcaggtt
cttatcaccagcagggacaggagtgtgacagatgctgtgtctggcaataaatatgagatt
catgtggaaagtggactaacacatgagaaaggactggaagttttagccctgtttgtgaat
atgaaaatatcagaactgccagaacaagctaactgcattgtaagggaatgcaaaggttct
cctcttgtgatatccttgataggtgcattactacgagatttccctagtcgctgggaatac
tatctgaaacagttacagaataagcaatttaaaagaataagaaaatcttcatcttatgac
tatgaagccctcgatgaagcaatgtccataagtgtagagcaactgagtaatgatttaaaa
gattactataaagacctctccatcctcccaaaagatgttaaagtacctactaaggtgctc
tgtgttctttgggatatggaaactgaagaagttgaagatatactgcaggaatttgttaac
aaatcattattgttctgtgatcgtaatgggaattcatttcattattatttgcatgatctt
caacttgactttcttacagagaagaatcgcaaccagcttcaggaactacataaaaacata
gtaaatcagtacaagagatactacaagcttcatgtgcctgtgctatctcaagaggactgc
atgtactggtataattttctagcatatcacatggctggtgccaacatgcagaaggaactc
cgtgatcttatgttttctctagattggattaaagctaaaacagaactggtagggcctgct
catctaattcatgaatatgtagagtatagttcagtcctggatcaaaaggatagcatcata
cgtgagaattttcaggaatttctgtctttaaatgggcaccttcttggacgacagcctttt
cctgacattacccagctgggtctttgccaacctgagacatcagaggtgtatcagcaagcc
aagctgcgggctcaaagagaaacgggaacgttttacttggagtggataaataaaaaatcc
ttgaaaaacctttcccgtctggttgttcgtccgcatagagatgcagtttaccatgcctgc
ttttctagggatagacaaagaatagcatcatgtggagctgataaaacacttcaggtgttt
aaagcagaaagtggagagagattgctggagataagtgctcatgatgatgaaatactttgc
tgcactttttctgcagatgataaatatgtagctacttgttcagctgataaaaaagtgaag
atctggaattcaataacaggcaagtgtttgtacatatatgaagaacacacagagcaggtc
aattgctgccagttcaataacaggaggggtcagtatcttttagccacctgctcagatgac
actttcatcaaactttggaatttgaaggataagtactgtaggaatacaatgtttggtcat
gtaaacgctgtcagtcactgtagattttcaccaaatgatgactatattgctagctgctca
acagatggcacagtgaagctttgggatgtgcattcagcaaatgaactgaaaactattgag
ataaaagaattcttcaggaatgcagatgagcagcaagatgatgtggaagttttagtaaaa
tgttgctcttggtccagaagtagtgatacaattttggtggtagccaaaaataaacttttg
ctttttgatgtcacgacatgtaatctgttagcacaagtagttgtaagtcatcacagtaca
atccagtattgtgacttctgtgctggggatgagttagtagcagttgctttgtctcattgt
tctgttgagttgtggaatattaaatccttatcaaaagtagcagattgcaggggacacatg
agctgggttcactgtgtgacgttttcctcagatggatctttatttctgacatcttctgag
gaccagacaataaggatttgggaaacaaacaaggtgtgcaagtcttctgatgctgtgcta
aaaagtgaactggatgttgtatttcacaatggtgaagtcatgattttagcaatttacaat
cagaagcatattcaactcattaatggaaatacagacagcattatcatacagacagaacct
caggaatcccttatttgctgctgttgcttaagtgaagatcttaaatttgcagcatttggg
caggagaatggagcgataaagatactgcagttgttggatgggaaagttctgatgtcccgg
gaagcctacaggacatctgtgcagcactgtcgatttaccactgattgtcggactctgatt
tcaagtgctcatgatgcagtcatacaggtctggaattggcagttgaacgagtgtgtgttt
ctaagagggcataaggaagcaatcaaagactttgcatttctggaaaattcaaaacttctt
tcctggtcgtttgatggaacagttaaggtttggaatatcaccactggaataacagaaaaa
gattttgcttgccatagaggtgctgttctttcttgtgctatctcacctgatggtagtagg
ttttcatctacttctgctgacaaaactgcaaagatatggagctttgaaagttcatctgtt
cttcatgagttgaaaggccatgaagcctgtgtgcggtgctctgctttctctcctagtaat
aaattattggccactggagatgacaaaggagatataaggatttgggacattttaacaggt
gaattacttcacttctgctcctcagttactgtggatgaaggagaaccaacacatggtggt
tgggtaacagacctctcattttctcctgacagtaaaatgcttgtgtcatctggaggctat
cttaagtggtgggatgtaactacaggagaatccttgcaaaccttctacacgaatggaaca
aacctcaaatcaatacacgtgtcccctaattttgaagtgtacgtgactgttgataatctt
ggtattctttatgtattacagaagttgtga
DBGET
integrated database retrieval system
