KEGG   Lagopus muta (rock ptarmigan): 125693823
Entry
125693823         CDS       T09141                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
lmut  Lagopus muta (rock ptarmigan)
Pathway
lmut03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lmut00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125693823 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lmut03041]
    125693823 (SMNDC1)
Spliceosome [BR:lmut03041]
 Complex A
  U2 snRNP components
   U2 related factors
    125693823 (SMNDC1)
 Complex B
    125693823 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    125693823 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067
Other DBs
NCBI-GeneID: 125693823
NCBI-ProteinID: XP_048802156
LinkDB
Position
5:complement(56348551..56357252)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNADNEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSSASALPSHSWKVGDRCMAIWSEDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLF
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtccgaagacctggccaagcagctggccagctacaaggcgcagctccagcaggtggag
gcggccttgtctgggaatgccgacaacgaggacttgctgaagctaaagaaggacttacag
gaagtcatagaactgaccaaagatctcctttctacgcaaccttcagaaactcttgcaagt
tctgacagttcagcttctgctctccccagtcactcctggaaggttggggacaggtgtatg
gcaatatggagtgaagatggacagtgttatgaagctgagattgaagaaatagatgaggag
aatgggacagctgcagtcacttttgctggatatgggaatgctgaagttacaccgctgttc
aacctcaagcctgtggaagagggaagaaaagcaaaagaggacagtggcaacaaacccatg
tccaaaaaagagatgatagctcagcaacgggagtataaaaagaaaaaagctttgaaaaaa
gctcagagaattaaagaactcgaacaggaacgagaggaccagaaagtcaaatggcaacag
ttcaacaacagagcatattctaaaaacaaaaaaggccaggtaaagcggagtatttttgct
tccccagagagtgtaactggcaaagttggagttggaacatgtggaattgcagacaaacct
atgacacagtatcaagatacctctaaatataacgtcaggcatttgatgcctcagtag

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