Lagopus muta (rock ptarmigan): 125694377 Help Entry 125694377         CDS       T09141                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism lmut  Lagopus muta (rock ptarmigan) Pathway lmut04115   p53 signaling pathway lmut04145   Phagosome lmut04148   Efferocytosis lmut04350   TGF-beta signaling pathway lmut04510   Focal adhesion lmut04512   ECM-receptor interaction lmut04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:lmut00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     125694377 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125694377 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     125694377 (THBS1)    04148 Efferocytosis     125694377 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     125694377 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     125694377 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     125694377 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:lmut04131]     125694377 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:lmut00536]     125694377 (THBS1) Membrane trafficking [BR:lmut04131]  Endocytosis   Phagocytosis    Opsonins     125694377 (THBS1) Glycosaminoglycan binding proteins [BR:lmut00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125694377 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 cEGF TSP1_ADAMTS TSP1_CCN Laminin_G_3 EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  125694377 NCBI-ProteinID:  XP_048803394 LinkDB All DBs Position 6:complement(29469112..29484366) Genome browser AA seq 1180 aa AA seqDB search MLAMGPAAVLVLLLLVLSGPEAKRTAESRGDDDSVFDLFELAGLIRKGAGRRAPGVHLVK GPESSSPAYRIEDASRIPAVPDSKFQDLLDIIHAEKGFILLATLRQAKKSRGTLLAVERK DGSGHVFSLVSNGKAGTLDLSLSGDGKQQLVSVEDALLATGHWKNITLFVQEDRAQLYVG CEKMENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNK GCSSSTSAIITLDNPMNGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMV TTLQDRVRKVTEENELIAKVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRK VSCPLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLN NRCEGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGMGMITRIRLCNSPVPQLN GKPCEGEARETKPCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKT CVGEAKGTQVCNKQDCPVDGCLSNPCFAGTTCTSSPDGSWKCGACPAGYHGDGIHCQDID ECKEVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGSQPFGRSVEDAMANKQVCKPRNPC TDGTHDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANAT YHCKKDNCPNLPNSGQEDYDKDGIGDACDNDDDDDGIPDDRDNCPFIYNPQQYDYDRDDV GDRCDNCPYNHNPDQIDTDNNGEGDACAVDIDGDGVLNERDNCQYVYNVDQRDTDLDGVG DQCDNCPLEHNPDQEDTDSDRIGDECDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGK GDACDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENV EISETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSG TFFINTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTT GPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKK IMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP NT seq 3543 nt NT seq  +upstreamnt  +downstreamnt atgctcgccatggggccagccgctgttctcgttctccttcttctggtgctcagcggcccg gaagccaaacgcacggcagagtcccggggtgatgatgacagcgtctttgatctctttgaa ctcgctggcttgattcgcaagggagctgggcgccgggcacctggggtgcacctggtgaag gggccggagtcctccagccctgcttaccgcattgaagatgccagtcgcatccctgctgtc cctgactccaagttccaagacttgctagatatcatccatgctgagaagggcttcatcctt ctggccactctccggcaagccaagaagagcagaggcacgctgctggctgtggaacggaaa gatggctctggtcatgtcttcagtctagtttcaaacggcaaggcaggcaccttggacctg agcctctctggtgatggcaagcagcagctggtgtctgtagaggatgctttgttagctaca ggacactggaagaacatcaccttgtttgtgcaagaagaccgggctcagctttatgtgggg tgtgagaaaatggagaatgctgaactggacattcccattcaaaacattttcaccagggac ctggccagcagtgccaggctccgtattgccaaagggggagtcaatgacaacttccaggga ctgttgcagaatgtacggttcgtgtttggaacaactctggaaactattctgaggaacaaa ggctgctccagctctactagtgcaatcattactttggacaaccccatgaatggttccagc ccagctatccgcaccaattacattggccataaaacaaaggacattcaagcagtctgtggc ttttcttgtgatgaactaactaacatgtttgtagaactgcaagggctacggtccatggtt acaacacttcaagacagagttcgcaaagtgactgaagaaaatgaactgattgccaaagtg gttcagatcactcctggagtatgcattcataatgggatcttgcacaaaaataaggaagag tggactattgacagctgcactgaatgtacttgccagaactctgccactatatgccggaaa gtgtcttgccctctcatgccttgttccaatgccactgtgcctgatggggagtgctgcccc cgatgctggcctagcgactacgcagatgatggatggtctccttggtctgaatggacttca tgttcggtgacctgtgggaatggaattcagcagagagggcgttcctgtgacagtctcaac aaccgctgtgaagggtcttctgtgcaaactcggacttgccaccttcaagagtgtgataag agatttaaacaagatggtggttggagccactggtcaccgtggtcatcatgttcagtcact tgtggtatgggcatgatcactagaattcgtctctgcaactctccagtaccacagctgaat ggcaagccttgtgagggtgaagcaagagaaaccaagccctgccagaaagatccttgccca attaatggcaactggggaccatggtctccatgggatgcttgcacagtaacatgtggagga ggacttcagaaacgcagccgtctctgcaataatcctgagcctcaatatggtgggaagact tgtgtaggtgaagctaaaggaactcaggtctgcaataaacaggactgtccagttgatggg tgtttgtctaatccctgctttgcgggaactacatgtacaagctcccctgatggatcttgg aagtgcggtgcctgtcctgctggctaccatggcgatggtatccactgccaagatattgat gagtgtaaagaagttcctgatgcctgctttgtcttcaatggagtacacaggtgtgagaat actgaacctggatacaactgtctgccttgtccaccacgtttcactgggtcacagccattt ggtcgcagtgttgaggatgccatggcaaacaaacaggtctgcaagccccgtaatccatgc acagatggaacacacgattgcaacaagaatgccaaatgcaattaccttggccacttcagt gacccaatgtatcgctgtgaatgtaaaccaggctatgcaggcaatggtataatctgtgga gaagatactgacttggatggatggccaaatgagaaccttgtctgtgttgccaatgccact taccactgtaaaaaagataactgccccaatctccccaactctgggcaggaagactatgat aaagatgggattggcgatgcttgtgataatgatgatgacgatgatggtattcctgatgac cgggacaactgcccattcatctacaacccacagcagtatgactatgacagggatgatgtt ggtgatcgttgtgataactgtccctacaatcacaatcctgatcagattgacactgacaac aatggagaaggagacgcatgtgcagtggatattgatggagatggtgtcctcaatgaaagg gacaactgccaatacgtctacaatgtagaccagagggacacagacttggatggtgttgga gatcagtgtgataactgcccactggaacataatcctgaccaggaagacacagactctgac cgtataggtgatgagtgtgacaacaaccaggacatagatgaagatggtcatcaaaataat cttgataactgcccttatgtgcccaatgccaatcaagctgatcatgacaaggatgggaaa ggtgatgcctgtgaccacgatgatgacaatgatggtattcctgatgacaaagacaactgc agattagttgccaacccagatcaagcagattctgatggtgatggacgtggagatgcttgc aaagatgactttgaccaagacagcgtgccagacattgatgacatctgtcctgaaaatgtg gaaatcagtgagactgacttccgaaggttccagatgattcccttggatccaaaaggaaca tcccaaaatgatccaaactgggttgtacgtcaccagggtaaagaactggttcagacagtc aactgtgaccctggccttgcagttggttttgatgaattcaatgctgtggacttcagtggc accttctttatcaatacagaaagggatgatgattatgctggctttgtatttggctaccaa tctagcagtcgtttctatgttgtcatgtggaagcagattactcagtcttactgggactcc acaccaaccaaagctcaaggctactcaggtctgtctatcaaggttgtgaattccaccaca ggtccaggagaacaccttcgtaatgctctgtggcacacaggaaacacacctggccaggtg agaactctgtggcatgaccctcgtcacataggctggaaagacttcactgcatacagatgg cgtcttagccatagaccaaagactggctacatcagagttgtaatgtatgaagggaagaaa atcatggcagactcaggaccaatctatgataaaacttatgctggtggtcgtctaggatta tttgtcttctctcaagaaatggtgttcttctcagatcttaaatatgaatgcagagatcca taa

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