Lagopus muta (rock ptarmigan): 125694458 Help Entry 125694458         CDS       T09141                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism lmut  Lagopus muta (rock ptarmigan) Pathway lmut04010   MAPK signaling pathway lmut04120   Ubiquitin mediated proteolysis lmut04140   Autophagy - animal lmut04144   Endocytosis lmut04620   Toll-like receptor signaling pathway lmut04621   NOD-like receptor signaling pathway lmut04622   RIG-I-like receptor signaling pathway lmut05132   Salmonella infection lmut05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:lmut00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     125694458 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     125694458 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     125694458 (TRAF6)    04140 Autophagy - animal     125694458 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     125694458 (TRAF6)    04621 NOD-like receptor signaling pathway     125694458 (TRAF6)    04622 RIG-I-like receptor signaling pathway     125694458 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     125694458 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     125694458 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:lmut04131]     125694458 (TRAF6)    04121 Ubiquitin system [BR:lmut04121]     125694458 (TRAF6) Enzymes [BR:lmut01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      125694458 (TRAF6) Membrane trafficking [BR:lmut04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     125694458 (TRAF6) Ubiquitin system [BR:lmut04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     125694458 (TRAF6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX Med21 PspA_IM30 RING_XB3-XBAT31 TRAF3_RING zf-RING_11 Sina_ZnF UPF0242 HAP1_N DUF4455 Spc29 U-box CENP-F_leu_zip DUF1664 zf-U1 HMMR_N PUMA_CC DUF16 ADIP Motif Other DBs NCBI-GeneID:  125694458 NCBI-ProteinID:  XP_048803679 LinkDB All DBs Position 6:complement(19323424..19345395) Genome browser AA seq 545 aa AA seqDB search MSLLHSDSSCGARDMDGGCCAAMASACSGGAKEDSVSVGSGTGNPPSSFTEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLTVKCPNKGCCMKMELRHLEEHQLHCDFTAVECPQCQGAFQKNHLKEHMTQ ECPRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTMLIRQQMPNHYDNDCPTAPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSIQNISVTATNPVPFINGLPFEPAL FSHVSHAPYNCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRNL EGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLQTLKQRTFVKDDTLLVRCEVLTRLDLNSLRREGFQARS TDGAA NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctacacagtgacagcagctgtggggcccgagacatggatggcggctgctgt gcggccatggccagcgcctgcagcgggggagcaaaagaagacagcgtgagcgtcggcagt gggaccggcaacccgcccagctccttcacggaggagacgcagggatacgacgtggagttt gatccgcccttggaaagcaaatatgagtgtccgatctgcctgatggcccttcgggaagca gtacagacaccgtgtgggcaccgtttctgcaaaggctgcattgtcaaatcaataagagat gcgggtcacaaatgtccagtagacaacgaaattctacttgaaaatcaactttttccagac aactttgcaaaacgggaaatcctttcattaacagttaagtgtcccaacaagggctgctgc atgaagatggagctgagacacttagaggagcaccagttgcattgtgatttcacggctgtg gaatgtccgcagtgccaaggagcctttcagaagaaccacctgaaagagcacatgacacag gagtgtccccggcgacaagtgtgctgtccaaactgtgccacatctatggcttatgaagat aaggagcttcatgaccaaacctgccctcttgccaatgtattctgtgaatattgcaacaca atgctcatcaggcagcagatgcccaaccattatgataatgattgtcctactgccccagta ccgtgcttttacagtgcctttgggtgtcctgaaaagatgcagaggaatgaactggcacgg cacatgcaggaattcactcaggttcacatgagaatgatggctcagagcattcaaaatatc agtgttactgctacaaaccctgtaccctttatcaacggcctaccgtttgagcctgccctc ttctcccatgtgtcacatgcgccatataattgtaatccagaagttgaaaactttaaagaa actattcagcaattggaaggtcgtctagtgagacaagatcaccaaatcagagaactcatt gcaaagatggagacgcagaacactcacatggcagaactcaaacgtaccatccgaaatttg gagggaaagattactgaaatggaggcacaacaatgtaatggtatttacatctggaagatc gagaacttcagtggacttcagaaagcccaggaagaagagaggcctgttgtgatgcacagt cccggcttctatactggaaaacctggctacaagctgtgtttgcgcctgcatatccagtta ccaaatgctcagcggtgtgctaattttatatcgctgtttgtccacacgatgcaaggggaa tatgacagccatctgccttggcctttccaaggcactattcgactttctattttggatcaa tcggaaggccctgagaggcagaatcatgaagaagtaatggaagccaagccagagttactc gccttccagagaccaacgattcatcgcaatccaaaaggttttggttatgtgactttcatg cacctgcaaactttgaagcaaagaacctttgtaaaggatgatacccttctggtgcgctgt gaagttctaacacgtctagatttaaacagccttcgcagggaaggatttcaagctcgcagt actgatggagctgcgtaa

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