Lagopus muta (rock ptarmigan): 125701583
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Entry
125701583 CDS
T09141
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125701583 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125701583 (KDM2B)
04121 Ubiquitin system [BR:
lmut04121
]
125701583 (KDM2B)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125701583 (KDM2B)
Enzymes [BR:
lmut01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
125701583 (KDM2B)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
125701583 (KDM2B)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125701583 (KDM2B)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
125701583 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
125701583 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
Motif
Other DBs
NCBI-GeneID:
125701583
NCBI-ProteinID:
XP_048819771
LinkDB
All DBs
Position
17:7114253..7217725
Genome browser
AA seq
1289 aa
AA seq
DB search
MKLSEKMKAEKDSGRRLRPIGRRRYDEHEDLSDVEEIVSVRSFNLEEKLKSKTYRGDFVH
SMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSIDSYSSDSWLDMDEESCDAHIREEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSAKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTPKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKPQVDSILRRKSDEVHLRRKRKFEK
PQEPSMRKRRRSWKASDERSALLKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHPLIPSLRSTPRGIARPPPSLSPPKCIQMERH
VIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRL
WTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSW
IAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSG
KEQFCGSCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSY
CNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVT
KEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccgaaaaaatgaaggcggagaaggattctggaagaagattgcggcccatt
ggtaggaggaggtacgatgagcacgaggacctctcggacgtggaggaaatcgtcagcgtc
aggagtttcaatctggaggagaaattaaagagcaaaacatatcgcggggatttcgtgcac
tctatggatgggaaagattttacttttgaatatgtgcaaagagaagctctcagagttcca
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcactgtc
agagatgtgaagctattagtgggaagtcgtcgaatagtggatgtgatggatgtgaacacg
caaagaggtgttgaaatgagcatgtcccagtttgtgagatactatgaaacgccagaggcc
cagcgtgaaaaactctacaacgtcatcagcttggagttcagtcacacaaagctggagaac
attgtcaagcgtcccaatgtggtggacttagtcgactgggtggataatatgtggccacag
catttgaaggagagacagacagatgctaccaatgctatttcagagatgaaatacccgaaa
gtgaagaagtactgtttgatgagtgtgaaaggatgcttcactgatttccatattgatttt
ggaggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgaactgaaacaaggctataca
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaagagaaaacgcagcatagacagctattcatcagat
tcgtggttagacatggatgaagaatcttgtgatgctcatatccgggaggaaaaggatgac
agcttggataagaactccaaatccctggtggatggctcctcctcacccaacagcacacat
tcagaaggaaaagagggtgcagggagaaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagtgcaaaatcaacgacccccacggattatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcatctcacagaa
tttgaactgaagggtttgaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagatccgcaggctctcctggaggacatgaagaacatt
ctgaaagaacatgctgatgatgaccaaaatcttgcgatttcgggtgtccctgtggtcagc
tggcccaagaagaccccaaagaacagggcggtcggacggcccaaagggaagctgggcgct
gcctctgcggtgaagctcgcagctaaccggagcacggccggggcacgccgcaggaggacg
cgatgccgcaagtgcgaggcgtgcctgcggacagagtgcggagagtgtcacttctgcaaa
gacatgaagaagtttggggggcctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtatgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcagatggtgtggttaacgac
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctg
aaggaacagaaaatgaacagagacaataaggaagtaacagatgctgcaaaacggaaaggg
gactgtgaagaaactcccaggcggaaatctgaggaacattccaaaaagcctcaagttgac
tcaattctgaggagaaagtcagacgaagtccatctgcggaggaaaaggaaatttgagaaa
ccccaggaaccctctatgagaaaacggcggcgatcgtggaaggcttcggatgagcggagc
gccctgctcaaacccctgcggcgcctcaagcaggagccagaggacgagctgccggaagcg
cctccccgctccaaggacagcgaccagtcgcgatccagctcgcccaccgcgggtcccagc
acagagggggccgagcccagggacaagaagaagttcaagatgaggcggaaaaggcggctt
cccaataaagaactgagcaaggagctcagcaaggagctcaaccaagagatccaaaaaacc
gagaacagccttgccaatgagaatcaccaacccatcaaatctgaacccgagagcgaaaac
gaggaacccaagcgcgccttgaacaacagcgagagactccataggttcagcaaagggttg
aacgggactccccgggagctgaggcacccgctcatccccagcctgcggagcacaccgcgc
ggcatcgcccggcccccgccctcgctctctcctcccaaatgcattcagatggagcggcac
gtcatccggccgccccccatcagcccccctccggactcgctccccctggatgatggggca
gcccacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagac
ttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagatta
tggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcatt
attaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctg
agctggcttatcaacagactgccaggtctccgagacctgctgttatcagggtgctcatgg
atagcagtgtcagcactttgtagttccagctgccctttactccgaactctggacgtgcag
tgggcagaaggactgaaggacgctcagatgagagacctcctgtcaccgcccacagataac
cggccaggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcaggg
aaggagcagttctgtgggtcatgccacattcgcccggatatcagctcaggtcagatcgac
aaccggagtaaactgcggaacatcgtggagctgcgcttggccggcctggacatcaccgac
gcgtcgttgcggctgatcatcaggcacatgcctctgctctccaaactcaatcttagttac
tgtaaccacgtgacagatcagtctattaacctgctgaccgcggttggaactaccacgcgg
gattcattaacggaaattaatttatcagactgcaataaggtgactgaccagtgcctgtcc
tacttcaaacgttgtggaaacatctgccagatcgacttgaggtactgcaagcaagtgaca
aaagaaggctgtgagcagttcatagcagagatgtcagtaagtgttcagtttgggcaagtg
gaagaaaaactcctgcaaaaactgagttag
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