Lagopus muta (rock ptarmigan): 125702047
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Entry
125702047 CDS
T09141
Symbol
TDG
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125702047 (TDG)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125702047 (TDG)
Enzymes [BR:
lmut01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
125702047 (TDG)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
125702047 (TDG)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
GAGA_bind
Motif
Other DBs
NCBI-GeneID:
125702047
NCBI-ProteinID:
XP_048820825
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Position
1:complement(53879238..53890212)
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AA seq
418 aa
AA seq
DB search
MAAGGASRSAMEAEELGRYYAYLQQAQAFYTFPFHQMMTAPPTMEAMTEQPTLEGIPEPN
LAQEPPKEVKKGGRKRKAKATEPKQPKKPAAKKEKATKSKGKQEKITDTFKVKRKVDRFN
GVSEAELLTKTLPDILTFDLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSNEQ
LNHMDDHTLPHKYGIGFTNMVERTTPGSKDLSSKEFREGGRILMQKLQKYKPRIAAFNGK
CIYEIFSREVFGIRVKNLEFGLQPHKVPETETLCYVMPSSSARCAQFPRAQDKVHYYIKL
KDLRDQLKGIAPNTEVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYCDRAPY
ESEQCNFSSNGTAPSNPQYCEGSSFGEVPNGQWMTQSFADQIPEFSAGMTQEREESTA
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggccgccggcggggcatcgcgctcggccatggaggccgaggagctgggcagatattac
gcttatctccagcaagctcaagctttttacacatttccgttccaccagatgatgactgcg
ccgcctaccatggaagccatgactgagcagccaactctagagggcattccggagccaaac
cttgctcaggaacctcctaaagaagttaaaaaaggtggaaggaagagaaaagccaaagca
actgagccaaagcaacctaagaagcctgctgctaagaaagaaaaagcgaccaagtcgaaa
gggaaacaagaaaagatcacagatacttttaaagtgaaaagaaaagtggaccgttttaat
ggtgtgtctgaagctgagcttctgacaaagactttacctgatattttaaccttcgatctg
gacatcgtaataattggcataaatcctggcttgatggcagcttacaaagggcatcattac
cctggacctggaaaccatttttggaagtgtcttttcatgtctggtctaagtaatgaacag
ctgaaccatatggatgaccacaccttaccacataaatatgggattggatttacaaatatg
gtggaaaggacaacacctggaagcaaagacctctccagtaaagagtttcgagaaggaggg
cgaattctgatgcagaaattacagaagtacaaacctcgtatagcagctttcaatggaaaa
tgtatctatgaaatttttagtagggaagtcttcggaatccgggttaagaacttggaattt
ggattgcagccacacaaagtaccagagacagaaactctgtgctacgttatgccatcatcc
agtgcaagatgtgctcagtttcctcgtgcacaagataaagttcattattacataaagcta
aaagacttacgggatcagctgaaaggcattgcaccaaacacagaggtgcaggaagtgcag
tacacgtttgacttacaacttgcacaagaggatgctaaaaagatggctgtcaaggaagaa
aagtatgatccaggttatgaagcagcatatggaggagcttactgcgatcgtgcaccatat
gaaagcgaacagtgcaatttctcttcaaatggaactgcaccaagcaatccacagtactgt
gaggggtcatctttcggtgaagttcctaatggacagtggatgacgcagtcctttgcagac
cagattccagagttcagtgctggtatgacacaggaacgagaggaaagcactgcataa
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