Lagopus muta (rock ptarmigan): 125702608
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Entry
125702608 CDS
T09141
Symbol
TRAF2
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04010
MAPK signaling pathway
lmut04137
Mitophagy - animal
lmut04141
Protein processing in endoplasmic reticulum
lmut04210
Apoptosis
lmut04217
Necroptosis
lmut04621
NOD-like receptor signaling pathway
lmut04622
RIG-I-like receptor signaling pathway
lmut04920
Adipocytokine signaling pathway
lmut05132
Salmonella infection
lmut05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125702608 (TRAF2)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125702608 (TRAF2)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
125702608 (TRAF2)
09143 Cell growth and death
04210 Apoptosis
125702608 (TRAF2)
04217 Necroptosis
125702608 (TRAF2)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125702608 (TRAF2)
04622 RIG-I-like receptor signaling pathway
125702608 (TRAF2)
09152 Endocrine system
04920 Adipocytokine signaling pathway
125702608 (TRAF2)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125702608 (TRAF2)
09171 Infectious disease: bacterial
05132 Salmonella infection
125702608 (TRAF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125702608 (TRAF2)
04121 Ubiquitin system [BR:
lmut04121
]
125702608 (TRAF2)
Enzymes [BR:
lmut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125702608 (TRAF2)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125702608 (TRAF2)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
125702608 (TRAF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-RING_6
zf-C3HC4_5
Thioredoxin_3
CEP104_ZnF
zf-C3HC4_4
zf-C3HC4_2
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
125702608
NCBI-ProteinID:
XP_048822095
LinkDB
All DBs
Position
19:1047996..1067414
Genome browser
AA seq
544 aa
AA seq
DB search
MALCVQALGVQPEFFVPMAAANSTPPGSLDLNQPGFAKEILGTKLEVKYLCSDCRNILRR
PFQAQCGHRYCSYCLKKIISSGPQKCASCIQEGIYEEGVSILETSSAFPDNAARREVESL
PAVCINEGCTWKGTIKEYESCHEGNCPFLLIECQACRAVIPLNEKERHSERECPERTLNC
KYCKSLFYFPDIKAHDEVCPKFPLTCDGCGKKKIPREKFQDHVKNCGKCKVPCRFEVVGC
AEMVENEKLPEHESKCLAEHLYMLLSFVLSLKSGSAGLKHLPALPSSQSGSPLLAANSLC
PESELFKSLELLGRCDALEKKTVTFENIVCVLNREVERVSLTAEAYSRQHRLDQEQIETL
SNKVRQLERSIGLKDLAMAEMEEKIRNMEASTYDGVFIWKITEFARKRQEAITGRSPAIF
SPAFYTSKYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQ
NNREHIIDAFRPDVTSSSFQRPVTEMNIASGCPLFCPVSVMEAKNSYVRDDAIFIKAIVD
LSGL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgcgtgcaggctctgggtgtacagccggaattttttgttcccatggcagca
gcaaattcgactccgcccggctctctggacctgaaccagcccgggtttgcgaaggagatc
ctgggaacgaaactggaggtgaagtacctctgctcggactgcaggaacatactgaggcgg
cccttccaggctcagtgcgggcatcgctactgctcctattgcttgaagaaaattataagt
tctgggcctcaaaagtgtgcaagctgcattcaagaaggaatatatgaagaaggagtttct
attttggaaaccagctctgctttcccagacaacgcagctcgccgggaggtggaaagtctg
cctgcagtctgtattaacgagggctgcacgtggaaggggactattaaggaatatgagagc
tgccatgaggggaactgcccgttcctgctgattgagtgccaggcatgcagggctgtgatc
cctctgaatgagaaggagcgccactctgagcgggagtgccccgagagaaccctcaactgc
aaatactgcaaatcacttttctacttcccagatattaaggctcacgatgaggtctgccca
aaatttccactgacttgtgatggctgcgggaagaagaagatccccagagagaagtttcag
gaccacgtgaagaattgtggcaaatgtaaagtgccttgcagattcgaggttgtcggctgt
gctgagatggtggaaaatgaaaagctaccagaacacgaaagcaagtgtctggcagagcat
ctgtacatgctgctgagttttgtgctcagcctcaagagtggatccgcaggcctgaagcac
cttcctgcccttccctcatcacagagcggctccccactgctggcagcaaactccctgtgc
ccagagtcggagctcttcaagtccctggagctcttgggaaggtgcgacgccctggagaag
aaaacagtgacctttgagaacattgtctgcgtgctcaatagagaggtggaaagggtgtct
ctgacagcagaagcgtacagccggcagcaccgattagaccaggagcagatcgagacgctg
agtaacaaggtccggcagctggaaaggagcattgggctgaaagacctggccatggccgag
atggaggaaaagatccgcaacatggaggcttccacctacgacggcgttttcatctggaag
ataacagagtttgccaggaagcgccaggaggcgatcacaggccgctctcctgcgatcttc
tctccagctttctacacaagcaagtatggctacaagatgtgtctgcgcgtttacctgaat
ggggacggcaccgggcgtgggacccacctgtccctgttcttcgtggtgatgaaaggaccc
aacgacgcgctgctgcgctggcccttcaaccagaaggtgaccctgatgctcttggatcag
aacaaccgggagcacatcatcgatgcgttccgacccgacgtgacctcctcctccttccag
cgcccggtcacagagatgaacattgccagtggctgcccgctgttctgccccgtctccgtg
atggaagccaagaactcctacgtccgcgatgatgccatcttcattaaagccatcgttgac
ctctcaggcctttaa
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