Lagopus muta (rock ptarmigan): 125703118
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Entry
125703118 CDS
T09141
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125703118 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125703118 (SMG6)
03032 DNA replication proteins [BR:
lmut03032
]
125703118 (SMG6)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125703118 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
125703118 (SMG6)
DNA replication proteins [BR:
lmut03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
125703118 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
Motif
Other DBs
NCBI-GeneID:
125703118
NCBI-ProteinID:
XP_048823142
LinkDB
All DBs
Position
20:4305262..4395897
Genome browser
AA seq
1424 aa
AA seq
DB search
MAEGLERVRVSAAELRDMVAAQARAGAAGGAENMKEVKEPRHRKDNRRPDLEIYKPGLSR
LRSKLVPPKHEASEERSGAEEGKGENGPSGGGSFRRRASSHGELQHGDSHNQNGPSLGND
EAEVKGDLQSQENTCTPRAVDECCAKTTRRIKKPDQQIYQPGKRLQLVAKEVALRLATEE
MTSKVEQLRVEGGEEAEKGSAEDNNKKTKSNKEDREGNQAGDGVKSSRTDKGRRLERSDR
VRRAHDEVMQGKVGATKRYSRSDKRRSRYRTCSTSSAGSNNSVDGAPLVDGMERRQERAR
IRPRKQLSASSTDSLDDDRIDEAEAYVSNRISDRKKRSEQSRASRSESEWSSNGREVKGH
FRVTFDSKTMNRDVVLADTDKKKPLKAFSGCNDSETLEARSQSREPQGRGRGILFLPANT
DLSACSVGSPEPSHPGPRLLLGGAGSKGSRSRGRGGTARRLWDPNNPDQKPALKSQTPQL
HFLDTDDEVSPTSWGEARQAQTSYYKFQNSDNPYYYPRAAGQAPQYPYGGYSLQYPMGPS
NGVYPGAFYPGYPGQTGQYMCGPLTPAPLSPEMEQQMRNMQQQELSKLLREAGNQEQQLS
NLLSRDRISPEGLEKMAQLRVEMLQLYERCILMDIEFSDTQNVDQLLWKNAFYQVIEKFR
QLLKDPLGENAQEIRNKLLQLLDEGTSFFDGLLQKLQVSYQFKLEDYMDGMAIRCKPLRK
MVKYALISAQRCMICQGDICRYREQANDTANYGKARSWYLKAQQIAPKNGRPYNQLALLA
IYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEQKKHQVLELSPSHRG
KGKKSTLRQVGDDGTRLEIWIHPSHPRSSQGHESGRDSEQDNGLGNLSPSDLNKRFILSF
LHAHGKLFTRIGMETFPAVAEEVLREFQVLLQHSPPPIGSTRMLQLVAINMFAVYNSQPK
ECISEDCRSVIQEQATALGLSMFALLVRRCTNLLRECMQVQPQEEEQEDEEDDIKVSALP
QDLKELLPSVKVWSDWMLGHPDTWNPPPTSLELPKQVSVDVWATLADFCNILTAVNQSEV
PLYKDPDDDLALLSLEEDRLLSGFVPLLVAPQEPCYVERTSDKVIAADCKRVTVLKYFLE
ALCGQEEPLLAFKGGKYVSVAPVPDAMGKEMGSQEGKQLEDQKEDDVRIEAFEDDSEAEG
SGGEMDIKELRAKKQALARKVAEQQRRQDKIQAVLKDQSQMRQMELEIRPVFLVPDTNGF
IDHLSSLITLLDCRKFILVVPLIVINELDGLAKGPEMEHRAAGYARQVQERARKSIEFLE
ERFEGRDNCLRALTSRGNELESISFRSEDTTGQQGNNDDLILSCCLHYCNDKAKDFMPSN
KDDPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPTFLKWAQEG
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggctggagcgcgtccgcgtctcggccgcagagctgcgggacatggtagcc
gcgcaggcccgcgccggggcggcaggaggagcagaaaacatgaaagaggtgaaggagcca
cggcatcgcaaggacaacaggcgcccagatctggagatttacaagcctggcctctcccga
ttgaggagcaaacttgtgccaccaaagcacgaggcctctgaggagaggagcggagctgag
gaaggcaagggggagaatggcccttcaggaggagggtccttcaggagaagggcctccagt
catggagaacttcagcatggtgacagccacaaccagaatggtccttcactgggaaacgac
gaggcagaggttaaaggtgatcttcagagccaggagaacacgtgcacgccgcgtgctgtg
gatgagtgttgtgccaagaccacgaggagaatcaagaaaccggaccagcagatctatcag
ccagggaagcgcctgcaattagttgctaaagaagtcgccctacggttggctactgaggaa
atgacctctaaagtggaacagctgagagttgaaggtggtgaagaggccgagaaaggttct
gcagaagataacaacaagaaaaccaagtcaaacaaagaggacagagagggaaaccaggca
ggggacggagtgaaatcctctaggacggataaaggaagacgactagagcgaagtgacagg
gtgaggagggcacacgatgaagtgatgcaggggaaggtgggcgctaccaagcggtattcc
cgctctgacaagcggcggagccgataccgcacgtgcagcacgagctcagctggaagcaac
aacagtgtagatggagccccgctggtggatgggatggagagacggcaggagcgtgctaga
atacgtcctaggaagcagctctctgcatcctccactgactccttggatgatgacagaatc
gatgaggcagaagcgtatgtctctaacaggatttcagacaggaaaaagcgttcagagcag
agtcgagcttctaggagtgagagtgagtggagcagcaacggcagggaagtcaagggacac
ttccgagtcacttttgacagcaagactatgaacagggatgtcgttctagcagacacagat
aaaaaaaagcccctgaaggctttttctggttgcaatgactcggagactctggaggcgagg
agccagagcagagagccccaggggaggggccgtgggattctgttcctgcctgccaacaca
gacctgtctgcctgctctgtgggctcccctgaacccagtcaccctgggcctcggctgctg
ctgggcggtgctggcagtaagggctcccgaagccggggccgaggtggcaccgctcgcagg
ttgtgggaccccaacaacccggaccaaaaacccgccctgaaaagccaaaccccacagctt
cacttcctagacacggatgatgaagtgagtcccacctcctggggggaagcccgccaggcc
cagacgtcctattataagttccaaaactctgacaacccctactattaccctcgggctgcc
ggccaagctcctcagtatccttacggcgggtactccctgcagtatccaatgggtccaagc
aatggtgtgtacccaggagccttttaccccgggtaccctggccagacagggcagtacatg
tgcggcccgctcaccccagcacctctgagtcctgagatggagcagcagatgcggaacatg
cagcagcaggagctcagcaaactcctccgtgaggctgggaaccaggagcagcagctcagc
aatctgctttccagagatcgcatcagcccagaggggctggagaagatggcccagctgagg
gtggagatgctgcagctgtacgagcggtgcattttgatggatatcgagttctctgatacc
cagaatgtggaccagctgctgtggaagaacgccttctaccaagtgattgagaaattccgg
cagctcctcaaggatcctctgggggaaaatgcccaagaaattcggaacaaacttctccaa
cttctagatgagggcacttccttttttgatggcttactccagaagctgcaggtgtcatac
cagttcaagctggaggactacatggatgggatggccatccgctgcaagcctctgcggaaa
atggtgaagtatgctctgatcagtgcccagaggtgtatgatttgtcaaggggacatttgc
agatacagagaacaagcaaacgatacggcaaactatggaaaggcacgcagctggtacctg
aaggctcaacaaattgctcccaaaaacggccgcccatacaaccagctggcactgctggcc
atctacacgaggagaaagctggatgctgtctactactacatgcgcagtctggcagctagt
aaccccatcctcacagccaaggagagcctcatgagtctgtttgaagagacaaaacgcaag
gcagagcagatggagcagaagaagcaccaggtgctggagctgagccccagccatcgaggg
aagggcaagaagtccacgttgcgacaagttggagacgatggcacgcggctggagatctgg
atccatccttcccacccccgctcctctcagggccacgaatccggcagagattctgagcag
gacaatggtcttgggaacctcagccccagcgacctgaacaaaaggttcatcctcagtttt
ctccatgcccatgggaagctgtttaccaggattgggatggagacgttccctgcggtggcc
gaggaggtcctgagggagttccaggtcctgctgcagcacagcccccctcccatcggaagc
acccgcatgctccagctcgtggcaatcaacatgtttgcagtgtacaactcccagcccaaa
gagtgcatctctgaggactgccgctctgtcatccaggaacaggccacggccctggggctg
tccatgtttgcactcctggtgaggagatgcaccaatctgctgagagaatgcatgcaagtt
cagccacaagaggaggagcaggaggatgaggaggatgacatcaaggtctctgccttgccc
caggacctgaaggagctgctccccagtgtgaaggtctggtcagactggatgcttggccac
ccagacacctggaatccgccaccaacttctctcgagctccccaaacaggtctcagtagat
gtgtgggcgacgctggctgacttctgtaacatactgaccgcagtgaatcagtcggaggtg
cccttgtacaaggacccagatgacgaccttgccctgcttagcctggaagaggatcggctg
ctctcgggcttcgttcccctgctggtcgccccccaggagccctgctacgtggagaggacc
tcggacaaggttattgcagccgactgcaagagggtcacagttctgaagtatttcctggaa
gccctttgtggacaagaagagcctttgctggcattcaagggtggaaaatatgtgtcagtg
gcacccgtcccagacgccatgggaaaggaaatgggaagccaagagggaaaacaactggaa
gatcagaaggaagatgatgtgaggattgaggcatttgaagatgactcagaggctgaaggc
agtggaggagagatggacatcaaggaactccgagccaagaagcaagcattggccaggaag
gtggcagagcagcagcgtcggcaggacaagattcaggctgtgctgaaagaccagagtcaa
atgaggcagatggagctggagataagacctgtcttcctggtcccagacaccaacggcttc
atcgaccacctcagcagcttgataacgctgctggactgcaggaagttcatccttgtggtg
cccctgatcgtgataaacgagctggacggcctggccaagggcccggagatggagcaccgg
gctgcaggctatgcccgccaagtgcaggagagagccaggaagtccatcgagttcctggag
gagaggttcgagggccgtgacaactgcctgagggctctgaccagccgaggcaacgagctg
gagtccatctccttccgcagtgaagacaccactggccagcagggaaataatgacgacctg
attctgtcctgctgcctccactattgcaacgacaaggccaaggatttcatgccctctaac
aaagacgatcccatccgtttgctccgcgaagtggttctgctgacggacgatcgcaacctg
cgagtcaaagcgctgacccgcaacgtgcctgtgagggacatccccaccttcctcaaatgg
gcccaggagggctga
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integrated database retrieval system
