Listeria monocytogenes CFSAN006122: Y193_06790
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Entry
Y193_06790 CDS
T03478
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmv
Listeria monocytogenes CFSAN006122
Pathway
lmv03030
DNA replication
lmv03410
Base excision repair
lmv03420
Nucleotide excision repair
lmv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Y193_06790 (ligA)
03410 Base excision repair
Y193_06790 (ligA)
03420 Nucleotide excision repair
Y193_06790 (ligA)
03430 Mismatch repair
Y193_06790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmv03032
]
Y193_06790 (ligA)
03400 DNA repair and recombination proteins [BR:
lmv03400
]
Y193_06790 (ligA)
Enzymes [BR:
lmv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Y193_06790 (ligA)
DNA replication proteins [BR:
lmv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Y193_06790 (ligA)
DNA repair and recombination proteins [BR:
lmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Y193_06790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y193_06790 (ligA)
MMR (mismatch excision repair)
DNA ligase
Y193_06790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Y193_06790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AHY98041
UniProt:
A0A3H3L5C5
LinkDB
All DBs
Position
complement(1817934..1819949)
Genome browser
AA seq
671 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKR
VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVGDDIAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLE
TLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGNTVKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPACDSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIQASKQNSLEKLLFGLGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTS
INDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI
EYLPDEGGLNE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaaaggtatgaggaactaatcaacatacttgatcagtacagctatgat
tattatgtaattgataatccaacagtagaagatgccgaatacgatcagaagatgcaagaa
ttacttaaaatagaagaagcgcatcccgagtgggttacacctgagtctccgtcaaaacga
gttggcggggaagttttagaaggttttaaaaaagtagcacatgacacgccgatgttaagt
cttgccaacgcttttaaccaagaagacttggcagactttgaccgccgaattcgcgacaaa
gtgggcgatgatattgcttatatgtgcgaacttaaaattgacggactagcagtatccctt
caatacgaaaatggtaaatacaaacaaggtgctactcgtggtgatggaaccattggggaa
gacattactgctaacttgcgtacgattcgctccatcccaatgaaacttcaaaaggactat
tccattgaagttcgcggtgaagctttcatgccaaaacgctccttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgttatttgccaatccacgaaatgctgcggctggctcg
cttcgacaattggacacaaaaatcgcagcgtcgagaaatctcgatatcttcctttatgca
gtagcagattttggtgaaatgggcgttgaaactcatagcgcaggcttagatatgcttgaa
acacttggtcttaaagtcaataaagaacgccgactttgcaacagtttagaagaagtttat
gcgtacattgaagaatggacagaaaaacgcgccggattagcatacgatattgacggcatt
gttttaaaattaaacaacttagagcaacaacgccaaatgggaaacaccgttaaatcgcct
cgttggtcgattgcttataaattcccagccgaagaagtaccaactaagttactcgatatc
gaattaaatgttggtagaactggtgtgataactcccaccgccgtgttagaaccagtgcga
gtggcagggacaaccgttagccgcgcttcgcttcataatgaagacctaattacagagaaa
gatatccgcattggcgacaccgttttaatcaaaaaagctggcgatatcattccagaagtc
attaaaagcatcaccgaaaaacgtagcggaagtgaagaacctttccatatgccaaaaaat
tgtccagcgtgcgatagtgaattggttcggttagaagaagaagtggcgttaagatgtatt
aatcctaaatgcccagctcaaataaaagaaggacttatccactttgtctccagaaatgcg
atgaacattgatggcctcggcgaaaaagtaattatccagctattttcacagcatttaatt
aaagatgtagcagatttgtttttcctttcgaaggagaaactgttagaattagaaagaatg
ggtgagaaatcggtaactaatttactggcatccatccaagcaagtaaacaaaactcgctt
gaaaaattacttttcggcttaggcattcgccatgttggtgcaaaagccgccaaatcactt
gccattcatttcgatacaatggataatttgaaagtagcagacaaagaaacactgacaagt
attaacgacattggtgaaaaaatggcagacagtattgtcacttatttcgcgaatgaagaa
gtacatgatttattagaagaactaaaaagggctggcgtcaatatgacctatacagggcca
aaactagaagatatgtccgaggaagaacttgttttcgcaggtaaaaccgttgtcttaact
gggaaactagaaaagttaacgcggaatgatgcaaaagcattaatcgaatccctcggagga
aatgtttctggaagcgtcagtaagaaaacggatgttgttgtagctggcagtgatgctggt
tctaaattagccaaagcggaagaactagccattcctatttggtcagaagaagacttaata
gagtacttaccagacgaaggtggattaaacgaatga
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