Listeria monocytogenes 08-5923 (serotype 1/2a): LM5923_1909
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Entry
LM5923_1909 CDS
T01164
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmy
Listeria monocytogenes 08-5923 (serotype 1/2a)
Pathway
lmy03030
DNA replication
lmy03410
Base excision repair
lmy03420
Nucleotide excision repair
lmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LM5923_1909 (ligA)
03410 Base excision repair
LM5923_1909 (ligA)
03420 Nucleotide excision repair
LM5923_1909 (ligA)
03430 Mismatch repair
LM5923_1909 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmy03032
]
LM5923_1909 (ligA)
03400 DNA repair and recombination proteins [BR:
lmy03400
]
LM5923_1909 (ligA)
Enzymes [BR:
lmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LM5923_1909 (ligA)
DNA replication proteins [BR:
lmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LM5923_1909 (ligA)
DNA repair and recombination proteins [BR:
lmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LM5923_1909 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LM5923_1909 (ligA)
MMR (mismatch excision repair)
DNA ligase
LM5923_1909 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LM5923_1909 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
HHH_8
DUF7201
Motif
Other DBs
NCBI-ProteinID:
ADB71750
LinkDB
All DBs
Position
complement(1913131..1915146)
Genome browser
AA seq
671 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKR
VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVGDDIAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLE
TLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMGTTVKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTCDSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLKVADKETLTS
INDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI
EYLPDEGGLNE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaacggtatgaagaactaatcaacatacttgatcaatacagctatgat
tattatgtaattgataatccaacagtagaagatgccgaatatgatcagaagatgcaagaa
ttacttaaaatagaagaagcgcatcccgagtgggttacacctgagtcaccgtcgaaacga
gttggcggagaagttttagaaggtttcaaaaaagtagcacatgacaccccaatgttaagt
cttgccaacgcttttaaccatgaagatttggcggattttgaccgccgaattcgcgacaaa
gtgggcgatgatattgcttatatgtgcgaacttaaaattgacggactagcagtatccctt
caatacgaaaatggtaaatacaaacaaggtgctacccgcggtgatggaaccattggagaa
gacattaccgctaacttgcgcacgattcgttccattccgatgaaacttcaaaaggattat
tccattgaagttcgcggtgaagctttcatgccgaaacgctccttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgttatttgctaatccgcgaaatgctgcggctggctcg
ctccgacaattagacacaaaaatcgcggcgtcgagaaatctcgatatcttcctgtatgca
gtagctgatttcggtgaaatgggcgttgaaacacatagcgccggtttagatatgcttgaa
acacttggtcttaaagtcaataaagagcgccggctttgcagtagtttagaagaagtatat
gcttacattgacgaatggacagaaaaacgcgccgacttagcatatgatattgatggcatt
gttctaaaattaaacaacttagaacaacaacgccaaatgggaaccaccgttaaatcacct
cgttggtcgattgcttataaatttccagccgaagaagtaccaactaagttactcgacatt
gaattaaatgtaggtagaacaggtgtaataactcccaccgccgtgttagaaccagtgaga
gtggcagggacaaccgttagccgtgcttcccttcataatgaagatttaattacggaaaaa
gatatccgcattggcgacactgttttaatcaaaaaagctggcgatatcattccagaagtt
attaaaagcatcaccgaagaacgtagcggaagtgaagaaccattccatatgccaaaaaat
tgtccgacatgcgacagtgaactggttcgtttggaagaagaagtggcgctaagatgcatt
aatcctaagtgcccagctcaaataaaagaaggtcttatccactttgtttccaggaatgca
atgaatattgacggacttggcgaaaaagtaattattcagttgttttcacagcatttaatt
aaagatgtagcagatttgtttttcctttcgaaggagaaactgttagaattagaaagaatg
ggtgagaaatcagtaactaatttactggcatccatcgaagcaagtaaacaaaactcgctt
gaaaaactactttttggcttaggaattcgccatgttggtgctaaagctgccaaatcactt
gccgttcatttcgaaacaatggataatttaaaagttgcggacaaagaaacactgacgagt
attaacgacattggtgaaaaaatggcagacagtattgtgacctattttgcgaatgaagaa
gtacatgatttattagaagaactaaaaagggctggcgtcaatatgacctatacagggcca
aaactagaagatatgtccgaggaagaacttgttttcgcaggtaaaaccgttgtcttaact
gggaaactagagaagttaacacgaaatgatgcaaaagcactaatcgaatccctcggaggg
aatgtttctgggagcgtcagtaagaaaacagatgttgttgtagctggcagtgatgctggt
tctaaactagccaaagctgaagaactagccattcctatttggtcagaagaagacttaata
gagtacttaccagacgaaggtggattaaacgaatga
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