Levilactobacillus namurensis: RIN67_09050
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Entry
RIN67_09050 CDS
T09877
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lna
Levilactobacillus namurensis
Pathway
lna03030
DNA replication
lna03410
Base excision repair
lna03420
Nucleotide excision repair
lna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIN67_09050 (ligA)
03410 Base excision repair
RIN67_09050 (ligA)
03420 Nucleotide excision repair
RIN67_09050 (ligA)
03430 Mismatch repair
RIN67_09050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lna03032
]
RIN67_09050 (ligA)
03400 DNA repair and recombination proteins [BR:
lna03400
]
RIN67_09050 (ligA)
Enzymes [BR:
lna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RIN67_09050 (ligA)
DNA replication proteins [BR:
lna03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIN67_09050 (ligA)
DNA repair and recombination proteins [BR:
lna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RIN67_09050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIN67_09050 (ligA)
MMR (mismatch excision repair)
DNA ligase
RIN67_09050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIN67_09050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WNN64841
LinkDB
All DBs
Position
complement(1863779..1865830)
Genome browser
AA seq
683 aa
AA seq
DB search
MESESQKPVKELTQHQAAEEAADLRPQLIDWGKQYYDADAPAVEDDVYDRVYARLVALET
AFPAIVTADSPTQHVGGSARGDLPKVRHEIPMLSLGDVFSIDELKDFDARLRENVPADYA
GFDYNCELKIDGLAINLHYENGKFVQGSTRGNGQIGEDITANLATLPSIPKTLTRPLTID
VRGECYMPKQAFLDLNQRREAQGQAPFANPRNAAAGSLRQLDVQVTADRKLATFMYNIAD
YDPLDTRTQSGLLDELAELGFSTNPTYQVAHDMDDVQAYITTYTGQRADLAYGIDGIVIK
ANPLPLQRAMGATVKVPRWAIAYKFPPEEVETVVTDIEWTVGRTGIVTPTAVMNPVQLAG
STVARASLHNPDYLEAKDIRLGDTVLLHKAGDIIPEISQYVAAKRPADAQPYPIPTHCPS
CGAELVHLDEEVALRCINPSCPAQLAEGMNHFASRNAMNIAGLGPQIVAQLFDRHLVTDV
ASLYQLTSDQLLTLDKFGEKSAQNLLTAIDNSRNNSLERLLFGLGIRHVGAKAARSIAAH
FGDIQHLMAADADAIVAIDTIGQIIADSVVTYFSTDQVHQLIDRLAAVGVNLTYTSGAVV
TASDSPFANQRVVLTGKLQELTRPEATEWLEQHGATVTGSVSKKTDLLIAGEAAGSKLTK
AQKLGITIWNEAQLQAAMTENNG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagagagtcagaaacccgttaaagaactcacgcaacaccaagcggccgaagaa
gcggccgacttgcgaccacaactgatcgactgggggaagcagtactacgacgcggacgca
ccggccgtcgaagacgacgtgtatgaccgggtctacgcccgcttagtggccttagagacc
gcctttcccgccatcgtcacggccgattcaccgacccaacacgtcggcgggagtgcccgg
ggcgacctgcctaaggtccgccacgagattcccatgctgtcgctaggggacgtcttctcc
atcgacgagttaaaggacttcgatgcccggctccgggagaacgttcccgccgattacgcc
ggcttcgactataactgcgaactaaaaatcgatggcctagccatcaacctgcattacgaa
aacgggaagttcgtccaggggtcgacgcggggtaacgggcagattggtgaggacatcacc
gcgaacctggctacgctaccgtcgattcccaagaccctgacgcggccgttgaccattgac
gtgcggggcgagtgctacatgccgaagcaggctttcctcgacctgaaccaacggcgggaa
gcccagggccaagcgccatttgccaacccccggaacgccgcggcgggcagcctgcgtcaa
ctcgacgtccaggtgactgccgaccggaaactcgcgacgttcatgtacaacatcgccgac
tatgacccgttggacacccggacccaaagcgggcttctcgacgagctggcggagctgggg
ttcagtaccaacccgacctaccaggtcgcccatgatatggacgacgtgcaggcctacatc
accacttacacgggacagcgggctgacctggcgtacggcatcgacggcatcgtgatcaag
gccaaccccttaccgctgcagcgggccatgggggctacggtcaaagttccccggtgggcg
attgcctacaagttcccgcccgaagaggtggaaaccgtggtcaccgacatcgagtggacg
gtcggccggacgggtatcgtgacgccgaccgccgtgatgaacccggtccaactggccggt
agtaccgttgcacgggcgtcgttgcataaccccgattacctggaagccaaggacattcgc
ttgggcgacacggtcctgttgcacaaggccggggacattatccccgagatctcgcagtac
gtggcggccaaacgtccggctgacgcgcaaccgtatccgatcccaacacactgcccgtcc
tgtggggccgaactggttcacttggatgaggaagtggcgttgcgctgcatcaaccccagt
tgccccgcgcagttggcggaggggatgaaccactttgcgtcccggaacgcgatgaacatt
gccgggttgggaccacagattgtggctcagctctttgaccggcacttggtcaccgacgtg
gccagtttgtaccaactgaccagcgaccaattattaactttagataaatttggggagaag
tcggcccaaaacctcttgacagctatcgacaatagtcgcaataattcactagaacggttg
ctatttgggttagggattcggcacgtgggcgctaaggccgcccggtcgattgcggcgcac
ttcggggacattcaacacctgatggccgccgacgcggacgccatcgtggccatcgacacc
attggccagattattgccgacagtgtggtcacctacttcagtaccgaccaggtgcaccag
ttgatcgaccggttggctgcggttggcgtcaacctgacctataccagcggcgccgtggtg
acggctagcgatagtccgtttgccaaccagcgggtggtcctgaccgggaagttgcaagag
ctgacccggccggaagccacggaatggctggagcaacacggcgcgaccgtgacgggcagc
gtctccaagaagacggatctcctgattgcgggggaggcggccggcagtaagctgaccaag
gcccagaagctggggatcaccatctggaacgaggcccaattacaagcagccatgactgaa
aataatggatga
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integrated database retrieval system
