Enterobacter sp. SGAir0187: CWR52_18975
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Entry
CWR52_18975 CDS
T05333
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lni
Enterobacter sp. SGAir0187
Pathway
lni03030
DNA replication
lni03410
Base excision repair
lni03420
Nucleotide excision repair
lni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CWR52_18975 (ligA)
03410 Base excision repair
CWR52_18975 (ligA)
03420 Nucleotide excision repair
CWR52_18975 (ligA)
03430 Mismatch repair
CWR52_18975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lni03032
]
CWR52_18975 (ligA)
03400 DNA repair and recombination proteins [BR:
lni03400
]
CWR52_18975 (ligA)
Enzymes [BR:
lni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CWR52_18975 (ligA)
DNA replication proteins [BR:
lni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CWR52_18975 (ligA)
DNA repair and recombination proteins [BR:
lni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CWR52_18975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CWR52_18975 (ligA)
MMR (mismatch excision repair)
DNA ligase
CWR52_18975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWR52_18975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF2229
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AVH19128
LinkDB
All DBs
Position
3899784..3901799
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQYPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKTTESIVYCCELKFDGLA
VNILYEDGILKHAATRGDGALGEDITNNIRTIRCIPLKLHGKGIPKRIEIRGEVFINQSD
FEAMNENARRKGGKVFANPRNAAAGSLRQLDSSVTATRPLTFKCYGTGLVEDANMADTHI
ERLEQLHSWGLPISKATKLCNGPYKVIEFYKNIEAERSTLGFDIDGLVVKVNSLKLQEKL
GFVARAPRWATAFKFPAQEQITRLRDVEYQVGRTGAVTPVARLEPVQVAGVVVQNATLHN
ADEIERLGLRRNDHVIVRRAGDVIPQIVGVVESMRTDDAPLFIFPKTCPVCHSLIERVEG
EAVARCTGGLICRAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKEYVHTPADLFKLRTE
ELSGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIEELQKVPDVGIVVATHVFNFFAEESNRNVIGELLEEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcgccggaagtcccggatgcggagtatgaccgcctgatgcgc
gagttacgcgaattagaggcgcagtatcctgaactcatcacgccggattcccccacccag
cgcgtcggcgcagagccgctgggggccttcagccaggtgcgtcatgaagtgccgatgctg
tcgctggataacgtcttcgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctgaaaacaactgagtcaatagtttactgctgtgagctcaagtttgatggactggcg
gttaatattttatacgaggatgggattttaaagcatgcggcaactaggggagatggtgcc
ctcggagaagatattacgaataatattcgaacaatcagatgcatacctttaaaactacat
ggtaaaggaattccaaagcgtatagagatacgaggtgaagttttcattaaccaatcagac
ttcgaggcgatgaatgaaaacgcccggcgaaagggggggaaagtttttgcaaaccctcga
aatgcagctgctggatccttaaggcaacttgattcaagtgtgactgcgaccagacctctt
acattcaaatgctatggcacaggccttgttgaggatgcaaatatggctgacacacatatt
gaacggttggaacaattgcacagttggggcttgccaataagtaaagcgactaaattatgt
aatggcccttataaagtgattgaattctataaaaatatagaagcagagagatcaacatta
ggttttgatattgatggtttagttgtgaaggtaaactctcttaaactacaggaaaaactg
ggatttgtcgctagggctccgaggtgggcaactgccttcaaatttcctgctcaagaacaa
atcaccagattaagagatgttgagtatcaggttggcagaactggtgctgtaacaccggta
gctcgtttagagccagtacaagtagcaggagttgttgtccaaaatgcgactttacacaat
gctgatgaaatagagcgccttggtctaagaagaaatgatcacgtaatcgtccgtcgtgca
ggggatgtcatccctcaaatcgttggggtggttgagtctatgcggactgacgatgcacct
ttattcattttccctaaaacttgcccggtatgtcattccttgattgaacgagtggaaggc
gaagctgttgctcgatgtactggtggcttaatctgtagggcgcagcgtaaggaatcactg
aagcattttgtctcccgtcgggcaatggacgtagatggtatgggcgacaaaatcatcgag
cagttagtagaaaaagaatatgttcatacacccgcagatctctttaagcttaggacagaa
gaactttccggcctggaccgcatggggccaaagtcagcccagaacgtagttaacgcgctg
gaagccgccaaagagaccaccttcgcccgcttcctgtacgcgctgggcattcgtgaggtg
ggtgaggcgacggctgcggggctggcagcatactttggtacgctggaggcgctggaaaag
gcgagcatcgaggagctgcagaaagtcccggatgttggcatcgtcgttgccacgcacgtc
tttaacttcttcgccgaagagagcaaccgtaacgtcatcggcgaactgctggaagagggc
atcaaatggcccgcgccggtggtggttaatgctgaagagatcgacagtccgttcgccggt
aaaacggtggtgctgaccggcagcctgagccagctttcacgcgacgacgccaaagcccgt
ctggtggcgctgggggccaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatt
gccggagaagcggcgggttcgaagctggcgaaagcccaggagctcggcattgaggttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
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