Leptospira noguchii: MAL08_16690
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Entry
MAL08_16690 CDS
T08353
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lno
Leptospira noguchii
Pathway
lno03030
DNA replication
lno03410
Base excision repair
lno03420
Nucleotide excision repair
lno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MAL08_16690 (ligA)
03410 Base excision repair
MAL08_16690 (ligA)
03420 Nucleotide excision repair
MAL08_16690 (ligA)
03430 Mismatch repair
MAL08_16690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lno03032
]
MAL08_16690 (ligA)
03400 DNA repair and recombination proteins [BR:
lno03400
]
MAL08_16690 (ligA)
Enzymes [BR:
lno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MAL08_16690 (ligA)
DNA replication proteins [BR:
lno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MAL08_16690 (ligA)
DNA repair and recombination proteins [BR:
lno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MAL08_16690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MAL08_16690 (ligA)
MMR (mismatch excision repair)
DNA ligase
MAL08_16690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MAL08_16690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH_2
HHH
Hydrolase_6
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UOG37639
LinkDB
All DBs
Position
1:complement(3968466..3970511)
Genome browser
AA seq
681 aa
AA seq
DB search
MPKKKEDSQKTLSEKEAKGLIVKLSDKIRHHQYLYYVKNDPKISDFDFDQLFRQLQDLEE
KFPQFKDSASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKTGPEELYSVE
WKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIPLRLPEPITVYLRGEVFM
TFKDFEEFNALSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIFTYDATFPSLEKKFKTHQ
EIFSKLEKLTFPIPPNTVFVSGSKIAKIIQEFKKQKDSLGFPTDGLVIKLNDISKRDALG
YTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEIEPVNLAGTTVTFATLHNQ
DYIDELGVGIGAIVRVAKRGEIIPAVEEVVTPGKDVFKIPDRCPSCNTQTIKKESLVDLF
CPNPDCPDRVKNGIIFYCQRKQMDIEGLGDKQIEFLYDHDYIKSIADLYDLKDQKEKLME
EEGFGEKSVNIILKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGIDSMNEILSIAK
DQKKIESLLEIPGIGPSTIQAFQENFSDQRVLKLIERLKKADLKMKADPVKVADQQPFVG
QSWCVTGSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGITV
YDEKQFLDLLKSLKIDFKSLV
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaaaaaggaagattctcagaaaactctttcggagaaagaggctaagggactt
atagtcaaactctccgacaaaatccgtcatcatcaatatctctattatgtaaaaaacgat
ccgaaaatttctgattttgatttcgatcagttgttcagacaacttcaagatttagaggaa
aagtttccgcagtttaaagattctgcaagtcctaccttggtggtgggttctgatctagat
aaggattttgaaaagtttcaacataaacttccggtattgtctcttatcaatacgtataac
gacaacgagttattagaatgggtcaataaaactggtccggaagaattatactcagtagaa
tggaaaatagacggcgcttctattgtactatattatgaaaatggaattcttaaaaacgga
gtaactagaggttccggtggaattggagacgacgttaccgataatattcggactattcga
aatattcctcttcgtttgccggagcctataacggtttatcttcgtggcgaagtatttatg
acttttaaggattttgaagaatttaatgcactttcttccggtaaatatgcgaatccaagg
aacttgtctgctggatctatcaaacaaaaaaattcctcggatacggcaaaacgtcctctt
agaatttttacttacgacgcaacttttccgagtttggaaaaaaaatttaaaacacaccaa
gagattttttctaaactcgaaaaacttacatttccaattccacctaacacggtttttgtg
agcggatctaaaattgcgaaaatcatccaggaatttaagaaacaaaaagattctttggga
tttccgactgacggccttgtaatcaaacttaacgatatttctaaacgggatgcacttggt
tatacttctcattctcctagatgggcaagagcgtataaatttgatgcaatcatgaaagaa
agtaaaatcgtagatataacttatgcggttggtcgaactggaaaaattactcctagggcg
gaaatagaacctgtgaatcttgcagggacgaccgttacgtttgcgactcttcacaaccaa
gattatatagacgagcttggggtagggattggtgcgattgtaagagtggcaaaacgtgga
gaaattattcctgcagtggaagaggtggttactcccggtaaagacgtttttaaaattccg
gaccgctgcccttcctgtaatactcaaacgattaaaaaagaaagtttagtcgatctattt
tgtcctaatccagattgtcccgatcgtgtgaaaaatggaattatcttttactgtcagaga
aaacagatggatattgaaggactcggagataaacagatcgagttcttgtatgatcacgat
tatataaagtctattgcggacttgtatgatctgaaagatcaaaaagaaaagctaatggag
gaagaaggtttcggagaaaaaagtgtaaacattattctcaaagggatagaacaatccaaa
caaaaggattttcgttttttacttccttctctcggactttctgaactcggtcataaggta
acagaattgttaatcgaacatggaattgattctatgaacgaaattctttccattgcaaaa
gatcaaaaaaagatagaatcccttttggaaattcctggaattggaccttccacgattcaa
gcctttcaggaaaatttttctgatcaaagagttttaaaacttatagaacgtcttaaaaaa
gcggatcttaaaatgaaagcggaccccgttaaggttgcggatcaacaaccgtttgtggga
caatcctggtgtgtaaccggttcttttgaaaatttccagccaagagataaagcgatggat
ctgatcgtttattatggaggaaggaaggtgagcgctgtaagttcaaaaaccactcatctt
ttggctggtccaggagctggatctaaattagaaaaagcgaatgaacttggaatcaccgta
tacgacgaaaaacaatttttggacttgttgaagtctttgaaaattgatttcaagagtctt
gtttag
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