Paenilisteria newyorkensis: OTR81_10570
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Entry
OTR81_10570 CDS
T08875
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lnw
Paenilisteria newyorkensis
Pathway
lnw03030
DNA replication
lnw03410
Base excision repair
lnw03420
Nucleotide excision repair
lnw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lnw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OTR81_10570 (ligA)
03410 Base excision repair
OTR81_10570 (ligA)
03420 Nucleotide excision repair
OTR81_10570 (ligA)
03430 Mismatch repair
OTR81_10570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lnw03032
]
OTR81_10570 (ligA)
03400 DNA repair and recombination proteins [BR:
lnw03400
]
OTR81_10570 (ligA)
Enzymes [BR:
lnw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OTR81_10570 (ligA)
DNA replication proteins [BR:
lnw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OTR81_10570 (ligA)
DNA repair and recombination proteins [BR:
lnw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OTR81_10570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OTR81_10570 (ligA)
MMR (mismatch excision repair)
DNA ligase
OTR81_10570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OTR81_10570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WAO20734
LinkDB
All DBs
Position
complement(179036..181051)
Genome browser
AA seq
671 aa
AA seq
DB search
MAERERYEELIKELERLSYEYYVADNPTSPDSLYDQLLHELIALEEENPDWVTPESPSQR
VGGEVLAGFQKVAHETPMLSLGNAFNQEDLQDFDRRVREKVGEDVAYMCELKIDGLAVSL
QYEAGKYKRGATRGDGTVGEDITSNLRTIRSIPMTLQEPFTIEVRGEAFMPKQSFQKLNE
KREENGLEVFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGDMGVATHSEGLARLE
KLGLKVNKERRLCQSLEEIFAYIEEWTAARSGLAYDIDGIVIKVDSLEQQRTLGFTAKSP
RWSIAYKFPAEEVATKLLDIELGIGRTGVVTPTAILEPVRVAGTTVGRASLHNEDLIRER
DIRIGDTVLIKKAGDIIPEVIRVVEEDRTEEQVPYHMPTHCPTCESELVRLEGEVALRCI
NPKCPAQLKEGLIHFVSRNAMNIDGLGEKVVVQLFEQKLITDVADLFFLSGEKLVELERM
GEKSVQNLLASIDKSRENSLEKLLFGLGIRHVGAKAAKVLAQYFETMDALRVAEKEALIE
VPDIGEKMADSIVAYFENEEVHDLLAKLEKAEVNMMYTGPKLELMPEEALVFANQKVVLT
GKLEHLKREEAKALIESLGGNVTGSVSKNTDVVVAGSDAGSKLAKAEELGIAIWSEQKLM
EYLPDEGGQNK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagagaacgttatgaagaattaataaaggaactggagcggctgagttatgaa
tactatgtcgcggataacccaacgtccccggattccctctatgatcaacttttgcatgaa
ttgattgctttggaggaggaaaatccggattgggtgacgccagaatcgccgtcgcagcgt
gttggtggggaagtccttgctggttttcagaaggtggcgcatgaaacgccgatgctcagt
ctgggcaatgcgttcaaccaagaggatttgcaagactttgaccgccgcgtacgtgagaaa
gtgggcgaggacgtagcttacatgtgcgagctcaaaattgatggtttagcggtttctttg
caatatgaagcagggaagtataagcgcggggcaacacgtggcgatggaacggttggcgag
gatatcacgtcgaatttaagaacgattcgatcgattccgatgacgctacaagagcctttc
acgattgaagttcgcggcgaagcgttcatgccaaagcagtcatttcaaaaactgaatgaa
aaacgagaagaaaatggcctagaggtctttgctaatccgcgtaatgcggcggctgggtct
ctgcgccaattagatacgaaaattgcggcatcacgaaacttagatattttcttatatgcg
gtggcggatttcggtgatatgggtgtcgcgacacatagcgaaggcttggcgcggttagag
aaattaggtttaaaggtgaataaagaacgccggttgtgccagtctttagaagaaattttt
gcgtatatagaggaatggacggcagctcgttcaggacttgcgtatgatatcgatgggatt
gttatcaaggtggacagcttggaacagcaacggacgcttggcttcaccgcgaagtcgccg
cgttggtcaattgcttataaattcccagccgaagaagtcgccacgaaactgctagatatc
gaacttggcatcgggcgtaccggcgttgtgacaccgaccgcgattttagaaccggttcgt
gtagctgggacaacggttggtcgggcttcacttcataacgaggacttaattcgtgagcgc
gatatccggattggtgacaccgttttgatcaaaaaagcgggcgacatcattccagaggtg
attcgcgtggtggaggaagatcggacggaagaacaagtcccgtatcacatgccgacgcat
tgtccgacgtgtgagagtgagctggttcgtttggaaggcgaagttgccttgcgctgtatt
aatccaaagtgccccgctcagctaaaggaaggcctgattcactttgtttcgcgtaatgcg
atgaacattgacggtttaggtgaaaaagtagtcgttcagctttttgaacagaaattaatt
acagatgtagcagatttgtttttcctttcgggcgaaaaactggtagaattagagagaatg
ggcgagaagtctgttcagaacttactagcttctattgataaaagccgcgagaattcattg
gagaagctgctgtttggccttggtatacgtcatgttggcgcgaaggcagcgaaggtttta
gcgcagtattttgaaacgatggacgcgttacgtgtagctgagaaagaagctttgattgag
gtgcctgatattggtgagaagatggcggactcgattgttgcttattttgagaacgaagaa
gtgcacgatttgttagcgaagttggagaaagccgaagtgaacatgatgtatacaggtcca
aaactggaattgatgccagaagaagcgcttgtttttgcgaatcagaaagttgttttaaca
gggaaattagaacatctgaaacgtgaggaagcgaaggcgttgattgagagtttgggcgga
aatgttacggggagcgtaagtaagaacacggatgttgttgtggcaggaagtgatgcgggc
tccaaactggcgaaagctgaagaattagggatagccatatggagtgagcaaaaattaatg
gaatatttaccagatgaaggtggtcaaaacaaatga
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integrated database retrieval system
