Lepisosteus oculatus (spotted gar): 102682984
Help
Entry
102682984 CDS
T07349
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
loc03036
]
102682984 (smchd1)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102682984 (smchd1)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102682984 (smchd1)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102682984 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
102682984
NCBI-ProteinID:
XP_015209938
Ensembl:
ENSLOCG00000011069
UniProt:
W5MYZ4
LinkDB
All DBs
Position
LG9:32364619..32425754
Genome browser
AA seq
2034 aa
AA seq
DB search
MASASRKQDCDFSKDSSLPAVSCNPGLAVSFGFIRKVFVFDCRGQKNDTIEKVLEGGNVS
LEEFIATVRKEFTITTEEKFVLTTTAREAVNDQIFEELKNGNTLYLLNSVDQVLPVATRE
RIEFLPHYDTLVKSGMYEYYASQGQKSLPYAFAELIDNSLSATAYNKGVRSIDIRLMFDE
SQGKHAVVVIDNGSGMTSKQLNNWAVYRLSKFLRKDKEFESDHAGYVRPPPVSRSLNSDI
SYFGVGGKQAVFYIGHSTRMISKPPESVDVHELILCKDDFEKREKNNEAIYSGYIRNRKP
GDSFHITSDDERFLHGIIMEESGKDSFTTVVITGVLQDHIHYLKNHFHLWTRELAHVYHY
YVHGPNGNNLNATVKTGFVQNIDIQITMFEKGKVPKIVNLKEIKDDMQTLYISSSVDSFE
FRTRVEDEGVVEGIIRYHPFLYDKETYPEDPCAVTKAPDVDDEEDCVIINKEARGKRPIF
ECFWNGRLIPYTTVEDFDWCAPPKKRGIVPLECYNRISGVLFTNDRFQVSTNKLTFMDLE
LRLKDKSTIFTRILNAQEQRIKIPKEFTQWLKECHEKWDKQIKFSGFKGIITRSDVSTKK
MQSPWAIYTSIDWDGKTFQAGQLVKSIKTQPIFCGSINQFLLYGDHEGDVYATGGEVQIS
LEPKALYDEVRVIPISKIDRNVHITVIKKYLEDEIARLPDRLSVTWPDGDELVQNDVRSA
GTPIGAMRIEILNKKGEAMQKLPGSSHGSTKKLLVELKVIWHSPSGDIETNSHISQHGGK
WPYWFKKMENINKLGKYTLKLQVVLNESNASTYAGRSLPFQTYEFSVTEGNPFRFTLGPL
ESLLHIGEPFDIPLELLDEFGHPTPPPVNLVPVLECSSLDISYEKLVAEGTSCMIKGVKA
KGLVGNCQGKKYNLKVTLPGLKEDSQTVRVRVFPGPPHSLKVKPDSQKLVVENGASFPFH
VEVLDDAGNITAQPKLIVHCKFLGVPNLPVYTVDCSHTGIGVLTGPALHVKNIKKDQTIK
AKIEIPSCKNIEAVEKTLKLIPSTRVARLEIFSLDGERATQLKQQDDISWTAGDTLQNLI
FRMYDEGNREISITAALAQNIKVNWTPKVKREDLVQGILPDVKVPNSVKELRYCQVSFQD
EHVSLESSFTVKPLPDEPKRIKATLKGVCSVQMGEELNGEIHLEVTDQYGNKTNTWTSST
VGSIGVSSEGLDKSNLKITWQENVEGVVVQGIKFVPGAPGQRELCFAWRDFVEYIRINLT
AGPPAQLKLEGLQLDNTLTVFNGKELEKPFVVQLCDQWGNLTSDPQVRIALIKDAALQMT
PMPQALHVDKNGTATFPVCRVSALKGVYNIQFKGKFNKTTLEGPVVKLNVLPDPNKPVEI
LVDFNKNAVFPAGGFLTVFTVTVLSEVGKPMRNLNPAMMLMYMWKGQGPGMLPPESAATL
MCSKPKDNKKEGCFYFRDKIIPDHVGEYSIQFAFTVDKANVLWSKQISINVVPNDPVKLL
PDVLPPTPVVSNIRSTASRTLVNSLCLKIMDEYDNPTGADLNGKLVVSIESPNEPDTEIP
LFQGKVPRVQFNLTKGCAEITNLVIAENSPGTDGTEYILIFNPVIPGFVEENSLKPFKLP
FMFSNDCRKQQQMATLTREKDQIIKSIGAYKSLFDTNNQLVSELKCQAQEASVKEAQLKT
RLKNINVDVSQLNTVKQIEAAIKEKATMREKILKEPRRICMLPNTSKGNPDVLGKIAHLA
QIEDTEAAKVISWHLASDMDCVITLTTEAARQIYKDTQGRQQVLPLDSIYKKNLPDWNRP
LPHLRNGKACFEPLGNPVFARDLLIFPEHVQNCKIVFGMLLGDTILLDNLDAANHYRKEV
VKITHCPTLLTRQGDRIRSNGKFGGLQNKAPAIERLRGMIFGEPLPQSYHTMNEQIGLLQ
QYRTAMLKLTEVTDELKNHMQYLESPEMEKKKKELLSQEKQLKEIEVKLGMTPTGKTNGA
GWKRPILQTGDAIPIHTKRARRDKSALMEDVALGLPVDSSPETSAGTVTRKRKA
NT seq
6105 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgcaagcagaaagcaggactgcgacttcagtaaggactcttctctgccggcg
gtgtcctgcaatcctgggctagctgtctccttcgggttcatcagaaaggtattcgtgttt
gactgccgtgggcagaagaatgacaccatcgagaaggtcctggagggtgggaatgtgtcc
ctcgaggagttcatcgccactgttcgcaaggagttcacaattactacagaagaaaagttt
gtcttgacgacaacagccagagaagcagttaatgaccagattttcgaagagctaaaaaat
gggaacaccttgtatctacttaattctgttgatcaagttttgccagtggcaacaagagag
cgtattgaattcctgccgcactatgacacccttgttaaaagtggcatgtacgaatattat
gcaagccaagggcagaagtctttaccttatgcctttgctgagctgattgacaactctctg
tcagcaacagcatacaacaaaggagtgaggagcatagacattaggttgatgtttgatgaa
tcacaaggtaaacatgctgtagtcgtgattgataatgggagtggtatgacatcaaaacag
ctcaacaactgggccgtgtacaggttgtccaaatttctaaggaaagacaaagaatttgaa
agtgaccatgcagggtatgttcgtcctcctccagtgtctcgcagtttgaacagtgatata
tcctactttggagtgggtggaaagcaagctgtattctacattggacattcaaccaggatg
atcagcaaaccacccgaatctgtggatgttcatgaacttattctctgtaaagacgacttt
gaaaaaagagaaaagaataatgaagcaatatacagtggctacattcgaaaccgaaagcca
ggtgattcatttcacattacgtctgatgatgagaggtttttgcacggtattatcatggag
gaatctggaaaggacagttttacaacagtagtgataactggagttctgcaagatcatatc
cactacctgaaaaaccactttcatctttggaccagagagcttgcgcatgtttaccattat
tatgttcatggacccaatggaaacaatctgaatgctacagtgaagacaggttttgtacag
aacattgacattcagatcaccatgtttgagaagggaaaagttccaaagatagttaatcta
aaggagataaaggatgatatgcagactctgtacatcagttcctcagttgacagttttgag
ttcaggacacgtgtggaggatgaaggggttgtcgaaggaattatcagatatcaccctttc
ctttatgataaggaaacgtatcctgaagacccatgtgcagtaacaaaagcacctgacgtt
gatgatgaagaagactgcgtcatcataaataaagaagcccggggcaagaggcctatattt
gaatgcttctggaatgggcggttgataccttacacaacagtggaggacttcgattggtgt
gcccctccaaagaagagagggatagtgcctttggagtgttacaacaggatttcgggtgtt
ctgttcaccaatgacagatttcaggtgagcactaacaagctcacattcatggacctggaa
ctcagactgaaggacaagagcaccatcttcacccggatcttgaatgcacaggagcagaga
attaaaattcccaaggaattcactcagtggctgaaggaatgccatgaaaaatgggacaag
cagattaaattttctggtttcaaagggataataactagatcagatgtttcaacaaagaaa
atgcagagcccttgggcaatatacacatcaattgactgggatgggaaaacatttcaagca
ggtcaattggtgaaatcgatcaaaacccagccgattttctgtggcagtatcaatcaattt
ctgctctacggtgatcatgaaggagatgtgtatgccactggaggagaagtacagatctcc
ctggaacccaaggcactttatgatgaagttagagttattccaatttcaaaaattgataga
aatgttcatattactgtaattaagaagtaccttgaggatgaaatagcaaggcttccagat
cgcctgtctgtcacatggccagatggagatgaactggtgcagaatgacgttcgttctgct
gggacccctataggtgcaatgaggattgaaatattgaacaagaaaggagaagcaatgcag
aaacttcctgggtctagtcatggttcaacaaagaagcttttggttgagttgaaagttatt
tggcactctcccagtggggatatagaaacaaactcgcacatcagccagcatggtggaaaa
tggccttactggtttaaaaaaatggaaaacataaacaagttgggaaaatacactttgaag
ctgcaggtagtgttaaatgagagtaatgccagcacctatgcaggaagatctctgcctttt
caaacatatgaattttctgtgacagagggaaatccattcaggttcaccctgggaccgctg
gagtccctgctccacataggagagccctttgacattccactggagctccttgatgagttt
ggacaccctacacccccgcctgtgaatcttgtaccagttttggaatgcagttccctggat
ataagttatgaaaaacttgtggcagagggaaccagctgtatgattaaaggtgttaaagca
aaaggcctcgtaggcaactgtcaaggcaagaaatacaatttgaaagtaacgttgccgggg
ctgaaagaagactctcaaacagtgagagttagggtgtttcctggtcccccacattcgctg
aaggttaaacctgattcccaaaagcttgttgtagaaaatggagcctcttttcctttccat
gtggaagtgcttgatgatgcagggaacatcacagctcagccaaaattgatagtccattgc
aagttcttgggtgttccaaacttgccagtttatacagtagactgtagccacaccggcata
ggagtattaacaggcccagctttgcatgtaaagaacatcaagaaggatcagaccataaag
gcaaaaattgaaataccaagctgcaaaaacattgaagcagtagaaaagacgctgaagctc
atcccgagtacacgtgtggccagattagaaatcttcagtctggatggtgagagggcaacc
cagctaaaacagcaggatgacatcagttggactgcaggggacactctgcaaaatctcatc
ttcagaatgtatgatgaaggaaaccgggaaatctccatcactgctgctctagcacaaaat
attaaggttaactggacacctaaggtgaagagggaagatctggtccaaggaattctacca
gatgtgaaagtgcctaattctgtgaaagagctgcggtactgccaggtgtcatttcaggat
gagcatgtgtctctggaaagttcttttactgtcaagcctcttccagatgagccaaagcgt
ataaaagctacactgaagggtgtgtgctcagtacagatgggtgaagagctgaatggagag
attcatttggaagttacagatcagtatgggaataaaacaaacacatggacatcatccact
gtgggttcaattggtgtttcttcagaggggcttgacaagtccaacttaaaaattacctgg
caggaaaacgtggaaggagttgtagtccagggaataaaatttgttcctggtgcccctgga
caaagagagctatgttttgcttggcgagactttgtagaatacattcggattaacttgact
gctggacccccagcacagctgaaacttgaagggctacagttagacaataccctgactgtg
tttaatgggaaagaactagagaagccatttgttgtacagttgtgtgatcagtggggaaac
ctaacatctgacccacaagtcagaatagcacttataaaagatgctgccttacagatgaca
cctatgccacaggcactacatgttgacaagaatggtacagcaacttttccagtgtgtcgg
gtttctgcactgaagggagtgtacaacattcaatttaagggcaaattcaataaaaccact
ttagaaggtccagtagtgaagctgaatgtccttccggatcctaacaagcctgttgagatt
ttggtagactttaataaaaatgcagtttttcctgcaggaggctttttaacagtgtttact
gtgactgtcctgtcagaagttggcaaacccatgagaaatttaaatccagctatgatgcta
atgtatatgtggaaaggacaaggtccaggcatgctgcctccagaaagcgcagctacactt
atgtgcagcaagccaaaggataataaaaaagaaggctgtttttacttcagagacaaaata
attcctgatcatgtgggcgagtactcaatccagtttgcattcacggtggacaaggcaaat
gtattatggagcaaacagatttccataaatgtagtgcctaacgacccagtgaaattgttg
ccagatgtactgcctccaactccagttgtttctaatatccgttccactgccagtcggacc
ttggttaacagcctatgtcttaaaatcatggatgaatatgacaaccccactggtgcagat
ctgaatggcaaacttgttgtttccattgagagtcccaatgaacccgatactgagatccct
ctgttccaagggaaagtcccaagggtgcagtttaacctcactaaaggctgtgctgagatt
acgaaccttgttattgcagaaaacagccctggcacagatggaactgaatacattctgatc
tttaatccagttattcctggctttgtagaagaaaacagtctgaaaccattcaaacttcct
tttatgttttcaaatgactgtaggaaacagcagcaaatggcaacattgacacgtgaaaaa
gaccagattatcaagtccattggagcttacaagagtctttttgacacaaacaaccagctg
gtctctgagctgaaatgccaagctcaagaagcatccgtcaaagaggctcaactaaagact
cggctgaaaaacattaatgttgatgtatcacaactgaataccgttaagcaaatagaagct
gcaatcaaagaaaaggcaacaatgcgtgaaaagatcctgaaggaacctagaagaatttgt
atgcttcctaacacttctaaaggaaacccagatgttctgggaaagattgctcacttggca
caaatagaggacactgaagctgcaaaagtcatctcttggcatctggcaagtgatatggac
tgtgtgatcacactgaccacagaggcagcgcgtcagatttataaggacacgcagggaaga
cagcaagttcttcctctcgattccatctataagaagaacctcccagactggaacaggccc
ttgcctcatttaagaaatggaaaggcttgctttgaacctttaggaaatccagtgtttgct
cgagatcttctgatcttccctgaacatgttcagaattgtaaaattgtctttggaatgctc
ctgggagacactattcttcttgacaacttagatgctgcaaaccactataggaaggaggtt
gttaaaattacacattgtccaacattattgaccagacaaggggatcgtatccgcagcaat
gggaagtttggtggcctacagaacaaggcgcctgctattgagaggttacgaggaatgatt
tttggagaacctttgccacagtcttaccataccatgaatgaacaaataggtcttcttcag
cagtatcgcactgccatgctcaagctcacagaggtgacagatgagcttaagaatcatatg
cagtacctcgaatctcctgagatggaaaagaaaaaaaaagagcttctgtcacaggagaag
cagctcaaagagattgaagtgaaacttggtatgacaccaaccggtaaaacaaatggagca
ggatggaaaagaccaatattgcagactggtgatgccattcccattcatacgaaaagagca
cgacgagataaatctgctctcatggaagatgtggctttaggcttaccagtggacagcagc
ccagaaaccagcgctgggacagtaacaaggaagagaaaggcttag
DBGET
integrated database retrieval system
