Lepisosteus oculatus (spotted gar): 102684182
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Entry
102684182 CDS
T07349
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04010
MAPK signaling pathway
loc04120
Ubiquitin mediated proteolysis
loc04140
Autophagy - animal
loc04144
Endocytosis
loc04620
Toll-like receptor signaling pathway
loc04621
NOD-like receptor signaling pathway
loc04622
RIG-I-like receptor signaling pathway
loc05132
Salmonella infection
loc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102684182 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102684182 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
102684182 (traf6)
04140 Autophagy - animal
102684182 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
102684182 (traf6)
04621 NOD-like receptor signaling pathway
102684182 (traf6)
04622 RIG-I-like receptor signaling pathway
102684182 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102684182 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
102684182 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
loc04131
]
102684182 (traf6)
04121 Ubiquitin system [BR:
loc04121
]
102684182 (traf6)
Enzymes [BR:
loc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102684182 (traf6)
Membrane trafficking [BR:
loc04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
102684182 (traf6)
Ubiquitin system [BR:
loc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
102684182 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
U-box
zf-RING_5
zf-TRAF_2
TRAF3_RING
RING_XB3-XBAT31
ATG16
SlyX
zf-RING_11
DUF7310
MARF1_LOTUS
DUF7607
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
102684182
NCBI-ProteinID:
XP_015193595
Ensembl:
ENSLOCG00000001118
LinkDB
All DBs
Position
LG27:complement(1081429..1100413)
Genome browser
AA seq
589 aa
AA seq
DB search
MGVCETCRDLLGQGPGSLWRSVLKPARVSPISAPQGSAMSQSCCELEKDGGGGACCGAVV
PACADKGDGWGTLSSHEAGAHTQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCR
GCIEKSLRDAGQKCPVDNEVLTEDQLFPDNFAKREILSLTVRCPNQGCSQKMELRHLEAH
VAECVFAMVVCVLCHMSVCKSYLGQHEAQECPRRLVPCMNCACPVVFEESKYHEQECPLA
NVVCDYCTMELIRDQLQYHCDMDCPRAPVACTFSPFGCPEKMQRSDLAQHMQEFTQMHMR
YMADSLRSLSLSGSLLPASEMPDANFCPSRPVPGPLPLREPLAGAAVAAPASSLHCGCSG
SLQHLRETIQQLEARLVRQDHQLRELSIRTETQSGQVGELKRQVRSLEESARELEAQQCN
GIYVWKVENFSVYQRSQEAGQPVVIHSPGFYTGRPGYKLCLRLHLQTPSAPRCANYISLF
VHTMQGQYDSQLSWPFQGTIRLAILDQADGNHHTEVMETKPDLLAFQRPTIQRNPKGFGY
VTFMHLSALRQKDYLRDDTLLVRCEVTPRFDVSCIRREGFQPRGPEPSV
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtctgtgagacatgtcgcgacctgctgggacagggccctggctccctgtggcgc
tccgtgttgaaaccggcccgcgtgtcccccatttccgctccgcagggctcggccatgagc
cagtcgtgctgcgagctggagaaggacggcggtggcggggcctgctgtggggccgtggtt
ccggcctgcgccgacaagggggacggctggggcaccctcagctcgcacgaggccggcgcg
cacacgcagggctacgacgtggagttcgacccgcccctggagagcaagtacgagtgcccc
atctgcctgatggccctgcgggaggccgtccagacgccctgcggccatcgcttctgccgg
ggctgcattgagaagtccctaagggatgcagggcagaagtgtcccgtggacaatgaggtc
cttaccgaggaccagctgttcccagacaactttgccaagcgggagatcctgtccctcacc
gtgcgctgccccaaccagggctgcagccagaagatggagctgcgtcacctcgaggctcac
gtggcggagtgcgtgtttgccatggtggtctgtgtgttgtgccacatgtcagtgtgcaag
agctacctggggcagcatgaggcccaggagtgcccacgtcggctcgtcccctgcatgaac
tgcgcctgcccggtggtgtttgaggagagcaagtatcatgagcaggagtgtcctctagca
aatgtagtgtgtgattactgcactatggagctgatcagagaccagctgcagtatcactgt
gatatggattgccctagagctccggtggcctgtacgttcagcccctttgggtgtccagaa
aagatgcagcgcagcgacctggcccagcacatgcaggagttcacccagatgcacatgcgc
tacatggccgattccctgcgcagcctcagcctgagcggcagcctgctgcccgcttcggag
atgcctgacgccaacttctgccccagccggcccgtgcccggccccctgccgctccgggag
cccttggcgggggcggccgtggctgcgccggcctcctcgctgcactgcggctgctccggg
tcgctccagcacctgcgcgagaccattcagcagctggaggcgcggctcgtgcggcaggac
caccagctgcgggagctgagcatccgcacggagacgcagagcgggcaggtgggcgaactg
aagaggcaggtgcgctcgctggaggagagcgcgcgggagctggaggcacagcagtgcaac
ggcatctacgtgtggaaggtggagaacttctccgtctaccagcgcagccaggaggccggc
cagcccgtcgtgatccacagcccgggcttctacacgggccggcccggctacaagctgtgc
ctgcgcctccacctccagacccccagcgccccgcgctgcgccaactacatctccctcttc
gtgcacaccatgcaaggccaatacgacagccagctctcctggcccttccagggcaccatc
cgcctcgccatcctggaccaggcggacggtaaccaccacacggaggtgatggagacgaag
ccggacctcctggccttccagcgccccaccattcagcgcaaccccaagggcttcggctac
gtcaccttcatgcacctgagcgccctgcggcagaaggactacctgcgggacgacacccta
ctggtgcgctgcgaggtcacgccccgcttcgacgtgagctgcatccggagagagggtttc
cagcccaggggccccgagccctcggtgtaa
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integrated database retrieval system
