Lepisosteus oculatus (spotted gar): 102684408
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Entry
102684408 CDS
T07349
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04010
MAPK signaling pathway
loc04020
Calcium signaling pathway
loc04260
Cardiac muscle contraction
loc04261
Adrenergic signaling in cardiomyocytes
loc04270
Vascular smooth muscle contraction
loc04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102684408 (cacna1c)
04020 Calcium signaling pathway
102684408 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
102684408 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
102684408 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
102684408 (cacna1c)
04270 Vascular smooth muscle contraction
102684408 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
loc04040
]
102684408 (cacna1c)
Ion channels [BR:
loc04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
102684408 (cacna1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
102684408
NCBI-ProteinID:
XP_015208510
Ensembl:
ENSLOCG00000016617
LinkDB
All DBs
Position
LG8:complement(39648588..40088074)
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AA seq
2320 aa
AA seq
DB search
MFQKAFTLHRKPRHQRLPPEPDAKYKGKLVSETQLNYTYVRPGGSNYSSPSLPAPGGLND
HGVVGLAPEHIPSAGAALTWQAAIDAARQAKLMGTSAPISTASSTQRKRQHYSKQKKQGS
TAATRPPRALLCLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFPEDDSNA
TNSNLERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQ
ATKAEGATPIGGKAAGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALL
VLFVIIIYAIIGLELFMGKMHRTCLPVKDGIAGAILDEKPAPCAPDTAHGRHCKNSTKCE
PGWVGPNEGITNFDNFAFAMLTVFQCITMEGWTEVLYWMQDAMGYELPWVYFVSLVIFGS
FFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENED
EGLDEDKPRNLSMPTSETESVNTDNVPGGEMEGENCCTRLANRISKSKFSRYSRRWNRFC
RRKCRAGVKSNVFYWLVIFLVFLNTLTIASEHHDQALWLTEVQDIANKVLLALFTGEMLL
KMYSLGLQAYFVSLFNRFDCFIVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRY
WNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMETRRSTFDNFP
QSLLTVFQILTGEDWNSVMYDGIKAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAV
DNLADAESLTSAQKEEEEEKERKKLARTASPAKRPENEKPPIEEEKKEEKIELKSITADG
ETPTATKSQSLPLHYYCLLFLFMVTSPTLSSSGEDEDEEPEMPVGPRPRPLSELQLKEKA
VPMPEARAFFIFSHTNKFRVLCHKIVNHNIFTNLILFFILLSSISLAAEDPVRNDSFRNM
ILSYADYVFTGLFTIEIILKMTAYGAFLHKGSFCRNYFNILDLVVVGVSLISFFIRSSAI
NVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACIGVQLF
KGKLFKCTDGSKQTEAECRGHFIHYKDGDVNQPEKAERKWENNDFNFDDVLHGMMALFTV
STFEGWPDLLYRAIDSHTEDVGPVYNYRVEISIFFIIYIIIIAFFMMNIFVGFVIVTFQE
QGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKVWYVINSTYFEYLMFILILL
NTICLAMQHHGQSTSFNKAMNVLNMLFTGLFTVEMILKLIAFKPRGYFSDPWNVFDFLIV
IGSIIDVILSEINHYFCDAWNTFDALIVVGSVVDIAITEVNPADSASSSQSSVVRQMVRT
DGNLSQAPPVHSSSTHCLTTPDEPHVACDCLCVPTHTWVDLVAMASSVVQIVPVPCVLLP
SCLLCSYCGTVLPPSSCFIVFHWRSGRLIKKGLQNTEDNARISITFFRLFRVMRLVKLLS
RGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALKDNSEINRNNNFQT
FPQAVLLLFRCATGEAWQEIMLACYPVKKCETGSETGSASEDCGSIFAVFYFVSFYMLCA
FLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRI
QPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANEE
LRAIVKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKPS
QKTALSLQAGLRTLHDIGPEIRRAISGDLTVEEELEKAMKETASAASEDDIFRRAGGLFG
NHVNYYQSDGRNTFPQSFTTQRPLHINKAGNSSGDMESPSHEKLVDSTFTPSSYSSSGSN
ANINNANNTAIGRFPSPATYQSTISTVDGQRNPLTPSLLPRAAAWQLSAKRTRYYETLMR
SDSGDSRLPIIRREEASPDETYDENFTDEQEYCSEQSMLSSEMLGYHDEESKQLTPMEEG
EDNEERKLWQSPKRALLCPTTLGRRSSFHLECLKRQTKQPPDVSQKTVLPLHLVHHQALA
VAGLSPLLRRSHSPTLFTRLCSTPPATPCDRGNPYQRVPTLQLEGTGSYEKLNSSLPSVN
CGSWYADSTNGNTQRARPVSLTVPTHCQDSGRQFHGSAGSLVEAVLISEGLGHYAQDPTF
IEVTKQEIADACDMTIEEMENAADNILNGNSQPSPNGNLLPFINCRDHETQASSRPEGPV
IAVEEKEEEAETEGERSPGQRNCGLVEEDLPEDMVCVSSL
NT seq
6963 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagaaggcattcaccctgcatagaaagcccaggcaccagcgcttgccaccagag
ccagatgccaaatacaaaggaaaacttgtgtccgagacgcaactcaactatacctatgtc
cgccctggaggctccaactactcgagcccgtccctcccggctcctggtggtctgaacgac
catggggtggtgggcctggctccggagcacatcccctctgccggggcggccctcacctgg
caggctgccatcgatgccgcgcgccaggccaagctcatgggcactagtgcccccatctcc
accgccagctccacccagcgcaagcggcagcactacagcaagcagaaaaagcagggcagc
acggccgccacgcgcccgccccgcgccctgctctgcctcactctcaagaaccccattcgc
cgggcctgcatcagcattgtggagtggaaaccctttgaaataataattttgctgactatt
tttgctaactgtgtggccttagcgatctacatccctttcccagaggatgactccaacgcc
accaactccaatctggaacgggtggaatatctcttcctcattatattcacagtggaggca
tttttgaaagtcatagcctatggacttctcttccaccccaatgcgtacctacgcaatgga
tggaatttactagattttattattgtggttgtagggctttttagtgctattttagagcaa
gccacgaaagcagagggggcgactccgattggcgggaaggcagcggggttcgacgtgaaa
gctttgcgtgccttcagggtgctgcgtcccctacggctggtttctggggtgcccagtctc
caggtagttttaaattccatcatcaaagccatggtcccccttctgcacattgccttgttg
gttctctttgtaatcatcatttacgccatcatcggactggaactgttcatgggtaaaatg
caccgcacttgtttacctgtcaaggacggcatcgcaggggcaattcttgatgagaagcca
gccccctgtgcccctgacacagctcatgggaggcactgtaaaaacagcactaagtgtgag
ccaggctgggtggggcccaatgaaggcatcaccaatttcgacaactttgcctttgccatg
cttacagtctttcagtgcatcaccatggaaggatggacagaagtactatactggatgcag
gacgctatgggttatgagctcccctgggtctattttgtcagtctggtcatcttcggatcc
tttttcgttctaaatctggttctgggggtgttgagcggagagttctccaaggagcgagag
aaggccaaagccaggggtgacttccagaagctgcgagaaaagcagcagctggaggaggat
ttgaagggatacctggactggataacacaggctgaggacatcgaccctgagaatgaggac
gaagggctggatgaggacaagcctcgcaacctgagcatgcccacgagtgaaactgagtca
gtgaacacggacaacgtgcctggaggagagatggaaggagagaactgctgcacccggctt
gcaaataggatctccaaatccaagttcagtcggtattcccgacgatggaaccggttttgc
cgacggaagtgccgagcgggagtgaaatccaatgtcttctactggctggtgatctttctg
gtattcctcaacacactgaccattgcttccgagcaccacgatcaggccctctggctcacc
gaagtccaagacattgccaacaaagtgctgttggccctgttcacaggagagatgctgctg
aaaatgtacagcttgggactgcaggcctactttgtctcactgttcaaccgctttgactgt
ttcattgtctgtggtggtattctggagaccatcctggtggagaccaagatcatgtcccct
ttgggtatctcagtgctgcgttgtgtcaggctgctccgtattttcaaaatcacaaggtac
tggaactccctgagtaacctcgtggcatctctgctgaactcagtccgctccatcgcctcc
ctgctgctgctgctcttcctcttcatcatcatcttctctctactgggcatgcagcttttt
ggggggaagttcaacttcgatgaaatggaaacccgccggagcacttttgacaactttccc
cagtccctgctgactgtctttcagatcttgacaggagaggactggaattctgtaatgtat
gatggaatcaaggcctatgggggcccctccttcccaggaatgctggtttgcatttacttc
atcatcctcttcatctgcggaaactacatcctactgaatgtcttcttggccatcgccgtg
gacaacctggccgatgctgaaagcctgacatcagcccagaaggaggaagaggaagagaag
gagaggaaaaagctggccaggactgccagcccagcgaagcgccctgaaaatgagaagccg
ccaatagaggaggagaagaaggaggagaaaattgagctgaaatcaatcacagctgatgga
gagactccaactgcaaccaagtcccagtccttgcccctacattattactgcctcttattt
ctttttatggtgacctcacctaccctgtcttcctcaggggaggatgaagacgaggaaccc
gagatgccagtaggtcctcgccctcgcccgctgtcagagctgcagctgaaggagaaagct
gtccctatgcccgaggcccgcgccttcttcatcttcagccacaccaacaaattccgggtc
ctctgccacaagattgtcaaccacaacatcttcacgaacctcatcctttttttcatcctg
ctgagcagcatctctttagctgcagaagatccagtgcgaaatgattcctttagaaacatg
atcctgagctatgcagactatgtcttcactggactgttcaccattgagatcatcttaaag
atgacagcctatggagccttccttcacaaggggtccttctgtcggaattactttaatatc
ctggacttggtggttgtcggtgtatccctcatctctttttttattcgatcaagtgccatt
aatgttgtgaaaattctgagggtgctgagagtactgagaccactgagggctattaatcga
gccaagggcctgaagcatgtggtccagtgtgtgtttgtggcgataaggaccattgggaac
attgtcattgtcaccactttgctgcagtttatgtttgcctgcattggtgtccagctattc
aagggcaagcttttcaagtgtacagatggctctaagcagacagaggcagagtgcaggggg
cattttatccactataaagatggggatgtgaatcaacccgagaaggcagagcgcaaatgg
gaaaacaatgacttcaactttgatgatgtgctgcatgggatgatggctctcttcactgtc
tcgacttttgaaggatggccagatctgctttacagggctatagattcccacaccgaagac
gtgggacccgtttacaactaccgtgtagagatctccattttctttatcatctacatcatc
atcatcgctttcttcatgatgaacatcttcgtgggtttcgtcatagtcactttccaggag
cagggtgagcaggagtacaagaactgtgagctggacaagaaccagcgtcagtgtgtggag
tatgccctgaaagcccggcccctgcgcaggtacatccccaagaacccttaccagtacaag
gtgtggtatgtcatcaactccacttactttgagtacctgatgtttatcctcatcctcctc
aacaccatctgcttggccatgcagcatcatggtcagtcaacgtccttcaacaaggcgatg
aacgtactcaacatgctgtttactgggctcttcactgtggaaatgatcctcaaactcatc
gccttcaagccacggggttactttagtgatccatggaatgtatttgacttcctcatcgta
attggcagcataatagacgtcattctcagtgagatcaatcactatttttgtgatgcatgg
aatacatttgacgccttaattgttgtcggtagcgttgttgatatagcaatcactgaggtg
aacccagctgactctgcctcatcttcccaatcctccgtggtaagacaaatggtacggaca
gacggtaacctttctcaagcccctcctgttcactctagctccacccactgcctcaccact
ccagatgagccgcatgttgcctgtgactgtctgtgcgtgccaactcatacatgggtggat
cttgttgcgatggcgtctagcgttgttcagattgtgcctgtcccgtgtgtcttgctgccc
tcttgtttactgtgctcatattgtggcactgtgttacccccttcctcttgttttatcgtc
ttccattggagaagtgggcgccttataaaaaaggggctacagaacacagaagacaatgcc
aggatctccatcaccttcttccggcttttccgagtgatgaggcttgtgaagctcctgtct
cggggggaggggatacggaccttgctatggacattcatcaagtcctttcaggctttgccg
tatgttgcccttcttatagtgatgctgtttttcatctatgctgtgattggaatgcagatg
tttggtaagattgcactgaaggacaacagtgaaatcaaccgaaacaacaactttcaaacc
ttcccgcaggccgtgctactgctcttcaggtgtgcgactggggaagcatggcaagagatc
atgctggcgtgttaccccgtgaagaagtgtgaaacgggctccgagacgggaagtgccagt
gaggactgtggcagcatctttgccgttttctactttgtcagcttctacatgctttgtgcc
ttcttgatcattaacctctttgttgcggttatcatggacaattttgactacctgaccaga
gactggtccattctggggccacaccacctcgatgagttcaagagaatctgggctgaatac
gaccctgaagccaagggaaggataaagcacttagatgtggtgactctactacgcagaata
cagccccctttgggattcggaaagctctgtcctcatcgtgtggcctgcaagcgactggta
tccatgaacatgcctctcaacagtgatggcacagtcatgtttaatgccactctctttgct
ttggtgagaactgccttgcggatcaagactgaaggcaacctggagcaggcaaacgaagag
ctcagggcaattgtgaagaaaatttggaaaagaaccagcatgaagctcctggatcaagtt
gtgccaccagcaggagatgatgaggtcactgtggggaagttctatgccaccttcctcata
caggagtacttcagaaagttcaagaagcgcaaggagcaggggctggtcgggaaaccttcc
cagaagactgctttgtcgttgcaggcgggcctgcgcactcttcacgacattgggccagag
attcggagggccatatcaggggacctcactgtggaggaggagctggagaaagccatgaag
gaaactgcctctgctgcttcagaggatgacatattcaggagagctggtggtttgtttggc
aatcacgtcaactactaccaaagtgatgggcggaacacgttcccacagtccttcactacc
cagcgtcctttgcacattaacaaagcagggaacagctctggggacatggagtctccctct
cacgagaagctggtggactccactttcacacccagcagctactcttcatcaggctccaac
gccaacatcaacaacgccaacaacactgccataggccgcttccccagtccagccacgtac
cagagcactatcagtacagtggatggccaaagaaatccactcacccccagtcttctcccc
cgggcagccgcctggcagctcagtgccaagaggacacgttattatgagaccctcatgcgg
tctgactccggagatagccgcctgcccattattcgtcgagaggaggcgtcgcctgatgag
acatatgatgagaatttcaccgacgagcaggagtactgcagtgaacagagcatgctctcc
tctgaaatgctgggataccatgacgaggagagcaagcagctcacgcccatggaggagggc
gaggacaatgaagagaggaagctctggcagtccccaaagcgagccttgttatgcccaaca
acactaggtcgacgatcatccttccacctagagtgtttaaagaggcagaccaaacagcca
ccagatgtgtctcagaagactgtactgccccttcacctagtacatcaccaggccctggca
gtggctgggctcagcccgctcttacggaggagtcattcccccacactcttcacacggctg
tgctccacaccccctgctacgccctgtgaccgggggaacccctaccagcgtgtgcccacc
ttgcagctggagggcacgggctcctacgagaagctcaacagcagcctgccgtctgtcaac
tgtggctcctggtacgcggacagcactaacggcaacacccagcgggcgcggccagtctcc
ctcaccgtaccgactcattgccaagactcagggcggcagttccatggcagtgcaggaagt
ctggtggaggcggtcctgatttccgaaggcctgggccattatgcccaggaccccaccttc
atcgaggtgaccaagcaggagatcgccgatgcctgtgacatgacaatagaggagatggag
aatgcagctgacaacatcctgaatggcaacagccaaccgagccccaacggcaacctcctt
ccctttattaactgcagggaccatgaaactcaggcgtccagcaggccggaaggacctgtt
atagcggtggaagaaaaggaggaagaggccgagacagagggtgagaggtctccagggcaa
cggaattgtgggctagtggaggaggatctcccagaagacatggtttgcgtcagcagcttg
tag
DBGET
integrated database retrieval system
