KEGG   Lepisosteus oculatus (spotted gar): 102684712
Entry
102684712         CDS       T07349                                 
Symbol
clg4h9orf72
Name
(RefSeq) protein C9orf72 homolog
  KO
K23609  guanine nucleotide exchange protein C9orf72
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:loc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    102684712 (clg4h9orf72)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:loc04131]
    102684712 (clg4h9orf72)
Membrane trafficking [BR:loc04131]
 Autophagy
  Other autophagy associated proteins
   Rab associated proteins
    102684712 (clg4h9orf72)
SSDB
Motif
Pfam: C9orf72-like
Other DBs
NCBI-GeneID: 102684712
NCBI-ProteinID: XP_006629869
Ensembl: ENSLOCG00000012179
UniProt: W5N2X1
LinkDB
Position
LG4:complement(51862687..51883470)
AA seq 461 aa
MSSGCPPQSPAVAKTEVVLKGKSPLLAATFAYWDNILGPRVRHIWAPKSEQVLLSDGEIT
FLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIVSLIFDGDLKGDKNTCALSIILPQTE
LSFYLPLHTVCVERLKHIIRKGRIWMQKGYNIISVLNTEIIPIMDLLSSMKTHSVPEHID
IKDTVLNDDDIGDSCHEDFLHKAISSHLQTCGCSIVVGSNPEKVNKIVRTLCLFLTPAER
KCSRLCGGESSFRYDTGLFVQGLLKDATGSFVLPFRQVLYSPYPTTHIDVDINTVKQMPP
CHEHIYNQRRYMRSELSALWKAASDEEITPDTIILADETFTPDLNIFQDVMHKDTLVKSF
LDQVFHLKPGLSLRSTFLAQFMLVLHRKALTLLKYIDDETQKGKKPFRSLRSLKTDLDLT
VEGDLSIVMALAEKLKSGLHTFVFGKPFYTSVQERDVLMSF
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgtcgtcgggctgcccaccccagtccccagccgtggctaagaccgaggttgttttgaaa
gggaagtcgccgctcttagccgccacctttgcctactgggacaacatcctgggcccgaga
gtgcggcacatctgggcgccgaagtcagagcaggtgcttctcagcgacggcgagatcacg
ttcttggccaaccacaccctgaacggggagatcctgcggagcgccgagtgcggagccgtg
gatgtgaagttctttgtgctggcggagaagggggtcatcatcgtgtccttgatcttcgac
ggggacctaaagggggacaagaacacctgcgccctctccatcatcctgcctcagaccgag
ctgagcttttacctgcctctgcacacggtttgcgtggagagactgaagcacatcattcgc
aaaggaaggatatggatgcagaagggatacaacattatatcagtactgaacactgaaatt
attcctataatggatctcctttcttctatgaagacgcacagtgttccagagcacatagac
attaaagacacagtgctaaatgatgacgacattggagatagctgccatgaagattttctt
cacaaggcaatcagttcacacttgcagacatgtggctgttctatagtggtggggagcaat
ccagagaaggttaacaagattgttcgaaccctttgtcttttcctcactccagcagaacgg
aaatgttcacggctctgtgggggagaatcatccttcagatatgacaccggcctctttgtc
cagggcctgctgaaggatgccacaggtagttttgtgctgccctttcgccaggttctttat
tctccgtaccccaccacgcatatcgacgttgacattaacacagtgaagcaaatgccacct
tgccacgagcacatctacaaccagcgccgctacatgagatcagagctgtctgccctctgg
aaggcagcatctgatgaagagataactcctgataccatcatacttgcagatgaaactttc
actcctgacttgaatatttttcaagatgtcatgcataaagacacacttgtgaaatcattt
ttagatcaggtgtttcatctgaagcctgggctgtctctcagaagtacgtttcttgctcag
tttatgcttgtccttcacaggaaagcactcactttactaaaatacatagatgatgaaaca
caaaaggggaagaagccatttaggtctcttcgaagcctgaagacagacctagatctgaca
gtcgaaggagatctcagcatcgtgatggcgctggctgagaagctgaagtctggtctacac
acgtttgtatttggaaagcctttctacaccagtgtgcaggagagagatgttctcatgagt
ttttaa

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