Lepisosteus oculatus (spotted gar): 102686208 Help Entry 102686208         CDS       T07349                                  Symbol thbs1 Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism loc  Lepisosteus oculatus (spotted gar) Pathway loc04115   p53 signaling pathway loc04145   Phagosome loc04148   Efferocytosis loc04350   TGF-beta signaling pathway loc04510   Focal adhesion loc04512   ECM-receptor interaction loc04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:loc00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     102686208 (thbs1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102686208 (thbs1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     102686208 (thbs1)    04148 Efferocytosis     102686208 (thbs1)   09143 Cell growth and death    04115 p53 signaling pathway     102686208 (thbs1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     102686208 (thbs1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102686208 (thbs1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:loc04131]     102686208 (thbs1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:loc00536]     102686208 (thbs1) Membrane trafficking [BR:loc04131]  Endocytosis   Phagocytosis    Opsonins     102686208 (thbs1) Glycosaminoglycan binding proteins [BR:loc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102686208 (thbs1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd EGF_3 TSP1_ADAMTS TSP1_CFP_C EGF Laminin_G_3 cEGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  102686208 NCBI-ProteinID:  XP_015206247 Ensembl:  ENSLOCG00000012474 LinkDB All DBs Position LG7:complement(14858122..14871420) Genome browser AA seq 1173 aa AA seqDB search MQLIGGLFLLLMAWNCGAARVAESRDDNSVFDLFEKVRVHKKNNGVTLVKGADPYSPAYK ILDADLIPPVPETPFRDLIDAIHTEKGFLLLVNFKQFKRTRGSLLTVEKIDGSGPIFEII SNGKANTLDLVFSTENKQQVVSIEDADLATGHWKNITLFVQEDRAQLFVGCEEINSSELD VSIQRILTQDVPSIARLRIGKGAVKDRFMGVLQNIRFVFGTTLDAILRNKGCSRSPLTDT IILDNPVNGSSPAIRTDYIGHKTKADIQSVCGFSCEDLANMFKELKGLSVYVHQLSENLH KLHEENELIRNQIKIKHGVCLHNGIVYNNKDEWTVDGCTECTCQNSATVCRKISCPLMPC ANATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNFCEGTS VQTRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGTGVITRIRLCNSPTPQMGGKDCMGE GRQTKECKQSPCPINGNWGPWSLWDTCTVTCGGGVQTRKRLCNDPAPTYGGKDCIGEAGE TQLCNKQDCPIDGCLSNPCFAGSKCTSFPDGSWKCGPCPTGYHGDGVNCEDVDECKEVPD ACFEFNGVHRCENTEPGYNCLPCPPRFTGLQPYGRGVEDATAKKQVCTPRNPCADGSHDC NKNARCIYLGHFTDPMFRCECKPGYAGNGYICGEDTDLDGWPNEDLVCVENATYHCKKDN CPNLPNSGQEDYDKDGTGDACDSDDDNDGIPDDRDNCQFIYNPRQYDYDRDDVGDRCDNC PYNSNPDQIDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDQCDNCP LEHNPDQLDADSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHD DDNDGIPDDKDNCRLAFNPDQKDSDGDGRGDACKDDFDQDNVPDIYDVCPENFAITETDF RKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTD RDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLR NALWHTGDTLGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGHIRVVMYEGKKIMADSGS IYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDT NT seq 3522 nt NT seq  +upstreamnt  +downstreamnt atgcagttgatagggggtctctttttgctcctaatggcttggaattgtggagcggctcga gtcgcagaaagccgagacgacaatagtgtctttgacctgttcgagaaggtgcgagtacac aagaaaaacaatggggtgactctcgtgaagggcgcagatccttacagccctgcttacaag attttagacgctgacctgattcccccggttcccgagacccccttcagggacctaatagat gccattcacaccgaaaagggctttcttctcttggttaacttcaaacaattcaagcggacc aggggcagtctgctgacggtcgagaaaattgatggctccggacccatttttgagatcatt tctaacgggaaggctaacacgctggacctggttttctcaacggagaacaagcagcaggtg gtgtccattgaagacgcggacctggcgacgggccactggaagaacatcacactgttcgtg caggaagatcgggctcaacttttcgtgggctgcgaagaaatcaacagctctgaactggac gtgtccattcaaagaatcctgactcaggacgtacccagcattgcccgcctgaggatcggc aaaggagcggtgaaggacaggttcatgggtgtgctgcagaatatacgctttgtttttgga actactctggatgcgattttgaggaataaaggatgttccagatcacctttaacggatact ataattttggacaaccccgtcaatggatctagcccagccatcaggactgactacattgga cacaaaacaaaagcagatatacagtctgtgtgtgggttctcttgtgaagatcttgccaac atgtttaaggaacttaaaggactcagtgtctatgttcaccaattgtcagaaaatctccac aaactgcatgaagagaatgaacttatcagaaaccaaattaaaatcaagcatggtgtgtgt ctccacaatggcatagtctacaacaataaggatgaatggactgttgatggttgtactgaa tgcacttgccagaattctgccacagtgtgtcgcaagatctcctgccccctgatgccctgc gctaacgctactgttcctgatggagaatgctgcccaagatgtggcacaccaagcgactct gcagaggatggctggtctccctggtctgaatggactcattgttctgtgtcctgtggaaga gggattcagcagcgtggccgctcctgcgatcgtatcaacaacttctgcgagggcacgtct gtgcagacacgggactgctaccttcaggaatgtgacaagcgattcaagcaagatggaagc tggagtcactggtctccttggtcttcctgctccgttacctgtggcactggagtgattacg cgcattcgtctgtgcaattccccgactcctcagatgggtggcaaggactgcatgggagag ggccggcagacaaaggagtgcaagcaatccccttgtccgatcaatggaaactggggacca tggtctctctgggacacctgcactgtgacctgtggaggaggtgttcagactcgcaagcga ctctgcaatgatcctgcgcctacatatggtggcaaggactgcattggtgaggctggggaa actcagctctgcaacaagcaggactgtcccattgatgggtgtctatccaatccctgcttt gctggatcaaagtgcacaagctttcctgacggctcctggaagtgtgggccttgcccaaca ggttaccatggtgatggagtcaactgtgaagatgtagatgaatgtaaggaggttcctgat gcctgtttcgagtttaacggcgtccacagatgtgaaaacacagagccaggatacaactgt ctgccctgcccacctcgtttcactggcctacagccatatggtagaggtgtggaggatgcc acggcgaaaaagcaggtgtgcacaccccgaaacccttgcgctgatggaagccacgactgc aacaaaaacgcccgctgcatttacctggggcacttcacagaccccatgttccgctgtgaa tgcaagccagggtacgctggcaatggatacatttgtggggaggacactgaccttgatggc tggcccaatgaggaccttgtctgtgtggaaaatgccacctaccactgcaagaaggacaac tgtcccaaccttcccaactccggacaggaagattatgataaggatggaacaggggatgcc tgtgacagtgatgatgataatgatggcattccagatgacagggacaattgccagttcatc tataacccgaggcagtatgactatgatcgtgatgatgtgggagaccgctgtgacaactgc ccatacaacagcaaccctgatcaaattgacaccgacaacaatggagagggtgatgcttgt gctgtggacatcgatggtgatggtattctgaatgagaaggataactgtccctatgtgtac aatgtggaccagagagacacagacttagatggcgttggagatcagtgtgataactgccct ctggaacacaatccagaccagcttgatgctgactctgatcgggtaggagacaaatgcgat agcaaccaggacatagatgaagatggccaccagaacaacctggacaactgtccctacatt cccaatgccaaccaagctgatcatgacaaagatggcaaaggtgatgcctgtgaccatgat gatgacaatgatggcattcccgatgacaaggacaactgcagactggctttcaatcctgac cagaaagactctgatggtgatggacgaggtgatgcttgcaaagacgactttgatcaagac aacgtacctgacatctacgatgtctgtcctgagaactttgcaatcaccgagacggacttc cgtaaattccaaatggtgcccctggaccccaagggaacttcacagattgaccctaactgg gtggtgcgccaccagggcaaagagctcgtgcagaccgtcaactgcgatcctggcattgct gttggttttgatgaattcaacgcagtggatttcagtggcaccttcttcatcaacaccgac cgtgatgatgactatgctgggtttgtgtttggataccagtcaagctctcgcttctacgtg gtgatgtggaaacagatcacacagacctactggtctcatactcccacaaaagcccaggga tactcaggactgtccatcaaagttgtcaattctaccactggacctggagaacatctgcga aatgccctttggcacactggagatactctcggacaggtgcgcactctgtggcacgaccct aaaaatattggctggaaagacttcactgcttacagatggcatcttacccacagaccaaag actggccacattagggttgtcatgtatgaaggcaagaaaatcatggcagactctggaagc atctatgacaagacttatgcaggtggaaggctaggtctgttcgtattttctcaagaaatg gtatacttctccgacctcaaatatgaatgcagagatacataa

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