Lepisosteus oculatus (spotted gar): 102686541
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Entry
102686541 CDS
T07349
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03018
RNA degradation
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102686541 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
102686541 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102686541 (lsm3)
03041 Spliceosome [BR:
loc03041
]
102686541 (lsm3)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102686541 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
102686541 (lsm3)
Spliceosome [BR:
loc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102686541 (lsm3)
Complex C
U2 snRNP components
102686541 (lsm3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
DUF8043
vATP-synt_E
RimP_C
YfkB
Peptidase_M16_M
Motif
Other DBs
NCBI-GeneID:
102686541
NCBI-ProteinID:
XP_006631062
Ensembl:
ENSLOCG00000013560
UniProt:
W5N7V8
LinkDB
All DBs
Position
LG5:complement(44124282..44127969)
Genome browser
AA seq
102 aa
AA seq
DB search
MADEVDQQQTANTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaggtggaccagcaacagactgccaacactgttgaggagcctttggatctc
atcaggcttagtcttgatgagcgtatctatgtgaaaatgcgcaatgacagagagctaaga
ggaaggctacacgcatatgatcagcatttaaacatgatactgggagatgttgaagaaaca
gtaaccacggtagaaattgacgaagaaacttatgaagaaatttacaaatccacaaagagg
aacatcccaatgctgtttgttcggggagatggtgtagttttggttgctcctccactcaga
gttggttag
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integrated database retrieval system
