Lepisosteus oculatus (spotted gar): 102688472
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Entry
102688472 CDS
T07349
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102688472 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102688472 (eftud2)
Spliceosome [BR:
loc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102688472 (eftud2)
Complex C
U5 SnRNP specific factors
102688472 (eftud2)
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Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
102688472
NCBI-ProteinID:
XP_006638153
Ensembl:
ENSLOCG00000011460
UniProt:
W5N0D6
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All DBs
Position
LG15:446352..463517
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDDDDDLDRDERDAEEADEDDDEEPADPDEETPGMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRTKKFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSGIRISDGIVLFIDAAEGVMLNTERL
IKHAVQERLAVTVCINKIDRLIVELKLPPTDAYYKLRHIVDEVNGLLSMYTTDENLMVSP
LLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYTEFAKRLWGDVYFNPKTRRFTKKAPS
SNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCNR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQIEVN
RVPAGNWLLIEGCDQPIVKTATITEPRGNEDAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgacctgtatgacgagtttgggaactacatcggcccagagctggactccgat
gatgacgatgacttggacagggacgagcgagatgcggaggaggccgacgaggacgacgac
gaggagccggccgaccccgacgaggagacccccgggatggaggtggtgctgcacgaggac
aagaagtactacccgacggcggaggaggtgtacgggcccgaggtggagaccatcgtccag
gaggaggacacacagccgctcacagagcccatcattaaacctgtcaggacaaagaagttc
acgctgatggagcaggaactgccctccaccgtatatgacatggagtttctagccgatctg
atggacagtccagagctgatccgaaatgtcacactttgcggacacctgcatcatggcaaa
acctgcttcgtggactgtctcatcgagcagacgcaccccgagatccgcaagcgcgatgac
atggaccttcggtacactgacatcctcttcacagaacaggagagaggagtgggcatcaag
agcactccggtcacaatggtgctgccggactccaggggcaagtcctacctgttcaacatc
atggacactccaggccatgtgaacttctctgacgaagtgacctcaggaatccgcatctcc
gatggcatcgtgctctttattgatgctgcagaaggagtgatgctgaacacggagcggctg
atcaagcacgcggtgcaggagcgcctggccgtcaccgtctgcatcaacaagatcgaccgg
ctcatagtggagctcaagctgccgcccaccgacgcctactacaagctgaggcacatcgtg
gacgaggtcaacggcctgctgagcatgtacaccactgatgagaacctaatggtgtcccca
ctgctgggcaacgtgtgttttgccagctcacagtacagcatctgcttcacgctgggctct
ttcgccaagatctactccgacacctacggggatatcaactacacagagttcgccaagagg
ctctggggggacgtttacttcaatcccaaaacgaggaggttcaccaagaaagctcccagc
agcaactctcagcgcagctttgtggagtttgtactggagccactgtataaaatactgtct
caggtggtgggcgacgtggacacctctctgccccgggtgctggacgagctggggatccac
ctgaccaaggaggagctgaagctcaacatccggccgctgctgcgccttgtctgcaaccgc
ttcttcggggagttcacaggctttgtggacatgtgtgtgcagcacatcccttcaccacag
ggtggcgccaaaaacaagattgagcacagctacactgggggcctggactctgacctgggg
gaggctatggcagagtgtgaccctgatggccctctcatgtgtcacaccacgaagatgtac
agcacggaggacggggtccagttccacgcctttgggagggtgcttagtggtaccatccac
gcggggcagccggtgaaggtcctgggggagaactacaccctggaggacgaggaggactct
cagatctgcaccgtagggcgactctggatctctgtggccaggtaccagatagaggtcaat
cgggtgccagcggggaactggctgctgatcgagggctgcgaccagcccatcgtcaagact
gccaccatcacggagccccgcggcaatgaggatgctcagatcttcaggccgctgaagttc
aacaccgcctctgtgattaaaattgccgtggagcccgtcaatccctctgagctgcccaaa
atgctggatggcctgaggaaggtcaacaaaagctacccctcgctcaccaccaaggtggag
gagtccggggagcacgtgatcctgggcacgggggagctgtacctggactgcgtgatgcat
gacctgcgcaagatgtactctgagattgacatcaaggtggccgaccctgtagtgaccttc
tgtgagactgtggtggagacatcgtccctgaagtgttttgctgaaacgccaaacaaaaag
aacaagatcacaatgattgcagaacccctggagaaggggttggcagaagacattgagaat
gaagttgtacagatctcctggaacagaaagaagcttggagagttcttccagaccaagtat
gactgggatctgctggctgcccgttccatctgggcatttgggcctgatgccacaggacct
aacatcctggtagatgatactctcccatcagaggtggacaaggccttgctgggctcagtg
aaggacagcatcgtccagggcttccagtggggcaccagggaggggccgttgtgtgatgag
cccattcgcaacgtgaagttcaagatcctggacgcggtgatcgctcaggagccgctgcac
cggggaggagggcagatcatccccacggcgcgccgggtggtgtactcggccttcctcatg
gctacccctcgactgatggagccctactactttgtggaggtgcaggccccagccgactgt
gtgtccgctgtgtacaccgtcctggcccgcaggagaggtcacgtgacccaggacgcgccg
atccccggctcccccctctacaccatcaaggccttcatcccagccatcgactccttcggc
ttcgagacggacctgcgcacccacacccagggccaggccttcgcgctgtccgtcttccac
cactggcagattgtgcccggtgaccccttggataaaagcattgtgatcaggcccctggag
ccccagcctgcccctcacctggcccgcgaattcatgatcaagacccgccggcgcaagggc
ctgagcgaggacgtcagcatcagcaagttcttcgacgaccccatgttgctggagctggcc
aagcaggatgtggtgctcaactatcccatgtaa
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