Lepisosteus oculatus (spotted gar): 102691817
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Entry
102691817 CDS
T07349
Symbol
kdm2a
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
102691817 (kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
loc03000
]
102691817 (kdm2a)
04121 Ubiquitin system [BR:
loc04121
]
102691817 (kdm2a)
03036 Chromosome and associated proteins [BR:
loc03036
]
102691817 (kdm2a)
Enzymes [BR:
loc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
102691817 (kdm2a)
Transcription factors [BR:
loc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
102691817 (kdm2a)
Ubiquitin system [BR:
loc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
102691817 (kdm2a)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
102691817 (kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
102691817 (kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
C1_1
Motif
Other DBs
NCBI-GeneID:
102691817
NCBI-ProteinID:
XP_015209467
LinkDB
All DBs
Position
LG9:complement(17612050..17632106)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSDRYNANLVKHMEGKDFTFEYIQREGLRDPIIFEKPDGLGIKMPDPDFSVNDVKMFVGK
TFHIDFGGTSVWYHILRGGKVFWLIPPTAQNLELYENWVLSGKQGDIFLGDKASDCQRIE
LKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLHIYSIEDRTRVPTKFRYPFY
YEMCWYVLERYLYSLTKTSYLTPEFQRLSLGIGESLNSVNVLSLFSQPSWYQPCPPPPLP
VGRPRLYPSCPAPSRPPRPASVSALRRRRVRCKRCAACLRQECGVCNFCRDMKKFGGPGR
LKQTCVLRQCLAPGLPLSAVCEVCGEGSQDPSETPVFSLTLMECTACGQIAHPDCIKVSG
EGVVNKDLPSCWECPKCTLAKDTQTESSVSDEGDEDSVASAGSLSPAAPPSEKRSLREGV
GGGGGGEGDEGGGYRSSKHAGKPPLPLSALPLSRRQPSSSLSQRPRRIAPPPSHRLLLQQ
QQQQQRRRAGALGFNLRKRIKMERDKILNSVSIVENYSNACDGREFSLRHCAFAWSFPIA
RSNATHAASSSSRLRSSSRLSPALAASDTRHRGTGRRGTWGRPPKLGRPSSLVSRRNSGR
GGLKREGERQEESQRGARFRRRQQCKARRTDDGLSEGERDRLGGVSSHGKENRPHKSSRD
PSDDEDREEEEMEGVEEDDEGEDGEAHSDSEPDPPVLLVSDLSDDPLLNGSYLTVTLQRP
TRSKRDPGSIVPKLEAVSPKTGTQLNQGYIQRKSLHRPKSRAGLMASENPDPYSERRSSS
SRASRNFSSNSPLAQPSLSTPRHSELGVSEARVVVCRLDGGRERGDSRPDCVAGSSHPSF
NHHGHQQTSSQLSHTLSAALAGSRIGGSASSSPPPTLSSSSSFLMAQDGGSEPGCEKEVW
VSVFRYLTRAELCVCMTVCKSWYKWTCDKRLWTRIDLSRCRSVSPQALSGIIKRQPIILD
LSWTSISKKQLTWLINRLPGLKDLMLSGCSWSSVSALSTPSCPLLRTLDLRWAEGVRDTQ
IRDLIIPPGCDNHSKLRNMVSFRLSGLEVSDATLRLIIRHMPLLSRLDLSHCRLITDQSV
NLLTAVGSSTRNTLTEINLGGCNKLTDDCLVFLKRVSCLSLLDLRGCKGISRRACEAFIS
ELSVNALYCLSEDKLIQRIS
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacagatacaatgccaacctggtcaagcacatggagggcaaagacttcaccttt
gagtacatccagagggaggggctgcgggatcccatcatcttcgagaagccggacgggctg
ggaatcaagatgcctgatccggatttcagtgtgaatgacgtcaaaatgtttgttggtaag
actttccacatcgatttcggaggcacctctgtctggtaccacatactaaggggaggaaag
gtgttttggctgataccccccactgctcagaatctggagctgtacgagaactgggtcctg
tccggcaaacaaggcgacatcttcctcggggacaaggccagcgactgccagaggatcgag
ctgaagcagggctacaccttcatgatcccctcgggctggatccacgccgtctacacccca
gtggacactctggtgtttggggggaacttcctgcacagcttcaacattcccatgcagctc
cacatctacagcattgaggacaggaccagagtacctacgaagtttcgctaccctttctac
tatgagatgtgctggtatgtgctggagagatacctgtacagcctcaccaagacctcctac
ctcactcctgagtttcagaggctgtcgctaggcattggtgagtctctcaacagtgttaat
gtcctatccttattttcccagccctcctggtaccagccgtgccctcctcctccactgcca
gtggggcgtccacgattgtacccctcgtgtcctgcgccgtcccggccgccccgccccgcc
tctgtgtcggctctgcgcaggcgccgggtgcgctgcaagcgctgtgccgcctgtctgcgc
caggagtgcggcgtctgcaacttctgccgagacatgaagaaattcgggggccccgggcgt
ctgaaacagacctgcgtgctccgccagtgtctcgctcctggcctgcccctgtcagcagtg
tgtgaggtgtgtggggagggctctcaggaccccagtgagactccagttttctctctcacc
ctaatggagtgcacggcctgtgggcagattgcacatcccgactgtatcaaggtgtcagga
gagggtgtggtgaacaaggacctgccaagctgctgggagtgtcccaagtgtactctggcc
aaagacacgcagactgagtcctcagtcagtgatgaaggggatgaggacagtgtggcgtca
gcaggctctctctctccagcggcccccccatctgagaagcgctccctgagggagggagtg
ggtggtggagggggcggggagggggatgagggaggggggtataggtccagcaaacatgct
ggtaaaccccctctcccactgtcagctctgcccttgtcccggcgtcaaccatcctcctcc
ctcagccagcgtcctcgcagaatagcgccccctccctcccacaggctgctactgcagcag
caacagcagcaacagcggaggagagccggggctctggggttcaatctgagaaagaggata
aaaatggagcgtgacaagatcttaaactctgtgagtatagtagaaaattattcaaatgcc
tgtgatggccgagagttctcattgcgtcattgtgcctttgcttggtccttcccaattgcc
aggagtaatgcaactcatgcggcatcctcctcctcccgcctgcgctcttcctcccggctg
tccccggcgctcgccgcctccgacacccggcacagggggaccggcaggcggggcacctgg
ggacgccctcccaaattgggccgaccctcctctctagtctcccggcgcaacagcggaaga
gggggtttgaaaagggagggcgagaggcaggaggagagccagcggggggcgcgcttccgc
cgccggcagcagtgcaaggcccggcggacagacgacggcctctcggagggcgagcgcgac
cgcctcgggggcgtctcgtcgcacggcaaggagaacaggccgcacaagtccagcagagac
ccttccgatgacgaagaccgcgaggaggaagagatggaaggggtggaggaggacgacgag
ggggaggacggagaggcccactcggactcggagcccgacccgcccgtgctgctggtgtcg
gatctgagcgacgaccccctgctgaacggctcctacctcaccgtcactctccagcgcccc
acacgctccaaaagggaccctggctccatcgtccccaagctggaggccgtctcccccaaa
acagggacacaactcaaccaggggtacatccaaaggaagtccctacacaggccaaagtcg
agggctggactaatggcgtctgaaaatcccgacccctactccgaaaggaggtcttcatcg
tcccgcgcttcccgaaacttttccagtaactccccccttgctcagccatccctctccaca
cccaggcactcggagcttggggtgtcggaggcccgagttgtggtctgcaggctggacgga
gggagggagcgaggggacagtcgccccgactgcgtcgctggctccagccacccctcattc
aatcaccacggtcaccagcagacttcttcccagctctctcacaccctctccgcggcgctc
gcaggatcgaggatcgggggctccgcttcctcttccccccctcccacgctctcctcatcc
tcgtcgttcctcatggcgcaggacgggggcagcgagccgggctgtgagaaggaggtgtgg
gtgtcggtgttccgctacctgacccgggctgagttgtgcgtctgcatgactgtgtgcaag
agctggtacaaatggacctgtgataagcgcttatggacacgaatcgacttgagccgctgt
cggtcagtcagcccccaggctctgtccggcatcatcaagcgccagcccatcatcctggac
ctcagctggaccagcatttccaaaaaacagcttacctggctcatcaacaggcttccaggg
ctaaaggatctgatgctgtctggctgctcatggtcgtcagtgtcagctcttagcacaccc
agctgtcccctcctcaggactctggacctgcgctgggctgagggggtcagagatactcag
atcagggacctcatcatccccccaggctgtgacaatcacagtaagctaaggaacatggtg
tctttccggctatctggtctagaagtgagcgatgccacgctgaggctcattattagacac
atgcccctgttgtcccggctggatctgtcacactgtcgcctcatcactgaccagtccgtc
aatctgctgaccgctgtggggtcttctaccaggaacaccctcactgagatcaacctggga
ggctgtaacaagctcacggatgactgtctggtcttcttgaagcgggtgtcttgtctatct
cttctggatctgcggggttgtaagggaatcagccgaagagcctgcgaggcctttatctcc
gaactgtctgtcaacgcactgtactgtctttctgaggacaagcttatacagaggatctca
tag
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