KEGG   Lepisosteus oculatus (spotted gar): 102694542
Entry
102694542         CDS       T07349                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102694542 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:loc03041]
    102694542 (smndc1)
Spliceosome [BR:loc03041]
 Complex A
  U2 snRNP components
   U2 related factors
    102694542 (smndc1)
 Complex B
    102694542 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    102694542 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR SspH DUF2067 SH3_AtC3H22
Other DBs
NCBI-GeneID: 102694542
NCBI-ProteinID: XP_006630845
Ensembl: ENSLOCG00000012355
UniProt: W5N3J6
LinkDB
Position
LG5:35054094..35060423
AA seq 237 aa
MSDDLVKQLASYKAQLQQVEAALSTDAENEDLLKLQKDLQEVIELTKDLLSSQPSVAPTS
SDSSAAVPISHSWEVGDSCMAVWSEDGQLYEAEIEEIDEENGTAAITFLGYGNAEVVPLQ
NLKAVEEGKKSEEDGGKSKSRKEQIAQQREYKKKKALKKAQRMKELEQEREDQKTKWQQF
NNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtcagacgacctggtgaaacagttggccagctacaaagctcagcttcagcaagtggaa
gcagctttatcaacagatgcagaaaatgaagacctgcttaaattacagaaagatttacag
gaagtaatagagttgaccaaagacctcctgtcaagccagccctctgtggcccccaccagt
tcagacagctcagctgcagtccccatcagccactcctgggaggtgggggacagctgcatg
gctgtgtggagtgaggatggacagttgtacgaagcggagatcgaggagatagatgaggag
aacggcacggctgccattacgttcttgggatatggcaatgcagaagtcgtgcccctgcag
aatctgaaggctgtggaggaaggaaagaagtcggaggaggatgggggcaaatccaaatcc
aggaaggagcaaattgcccagcagagggagtacaagaagaagaaggcactgaagaaagct
cagagaatgaaggaactggaacaggaacgagaagaccaaaaaacaaagtggcagcaattt
aataacaaagcctattcgaagaacaagaaaggccaggtgaagaggagtatatttgcatca
ccggagagtgttaatggaaaagttggtgttggaacatgtggaatagctgataaaccaatg
actcagtaccaagacacatccaaatataatgtgaggcatctcatgccacagtaa

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