Lepisosteus oculatus (spotted gar): 102698102
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Entry
102698102 CDS
T07349
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03440
Homologous recombination
loc03460
Fanconi anemia pathway
loc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102698102 (brca1)
09124 Replication and repair
03440 Homologous recombination
102698102 (brca1)
03460 Fanconi anemia pathway
102698102 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
loc01009
]
102698102 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
loc04121
]
102698102 (brca1)
03036 Chromosome and associated proteins [BR:
loc03036
]
102698102 (brca1)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102698102 (brca1)
Enzymes [BR:
loc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102698102 (brca1)
Protein phosphatases and associated proteins [BR:
loc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102698102 (brca1)
Ubiquitin system [BR:
loc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102698102 (brca1)
Multi subunit type E3
BRCC complex
102698102 (brca1)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102698102 (brca1)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102698102 (brca1)
BRCA1-A complex
102698102 (brca1)
BRCA1-B complex
102698102 (brca1)
BRCA1-C complex
102698102 (brca1)
BRCA complex
102698102 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
102698102 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_assoc
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
BRCT_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_5
zf-Nse
zf-RING_6
zf-RING_10
U-box
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
102698102
NCBI-ProteinID:
XP_015217333
LinkDB
All DBs
Position
LG15:107093..155700
Genome browser
AA seq
1659 aa
AA seq
DB search
MAAPTCKVEDVKQVVSMIRRNLECPICLDLLRDPVSTRCDHQFCRMCMLKHLSGSKRAGA
QCPLCKAEVTKRSLQDSSRFKQLVEALQRTIHAFEQDTGTKFFTSPRILISAPETKRCEE
LWEEKGAPQSPVGRNRAKRATASKASKRPEGEGQPAASRGQDVSGTSKNRAQGSLLPLQL
DFSEVLLEQKNGLGAPDLGLTEAQAIGTKTRAESSACERLGGRITDSESQQELEAAISSA
AAEGFAKLMDLDDSSYFANSGTAVAGSSEPTTQDRERSAADVTDPVIPVRLHMGNNRDLT
SSREEEEHSFVSASKDVKDSEHLASRKKNYLSSNDQDPSGENKTFDVSEKSKTNNKDNSL
QSAENLKASDFAQVSSNKILEKRRKTSVQKVMDWLSRIDEKACFPEEENRPAETPSDADS
LLEEVKSNESDGDSSATEKCDELVQECVESLKKTDRRSTLEDQVFGVVYKRARRTSAQLN
KSFSSDRKGVEVFSSSSSKEHQANKKVCKRKSNELTPADFIKRPSPVAETSDATSQPARS
DAGGRVRSESLHVLVSDGNQPEIEQRPSPSQRTARAETTQAGGSWKDEEEDLQPDRQERK
GKKSKPNTKDNRKRNALTRKKAIKAAKPLDLVSCQQNNTGQDADSAGPWKPTINETEAQI
ESYPSSEEPAGRAGEPHATRRSRRLQLLTEKVRCTGRRLRTEDSELERDPQAPDQSENGQ
CLLTSDQAGMLTCKGVEQLCESSEKENETTEVLKVSEGYEDIQQQSGHIVVESSLVSIIR
NAESPCNSNKAFKGDQLVPSALDISEGPDTGSDVAVMDELLPGELTEGKNDSELETEQIL
KTFKISKRRSFNLLPSPEYPSQESEFCDNKASEKNENPEEEKGQVNVAVERTSLQSEKEL
DSSCVKEPAETPGTNLEQPEKPETLRNEQYSASRHVETENSGCTDIIPPTKPASPRPVSF
DSCRNVDIKSGQTLFADVSEADKISDGSTSTFSSICTDSQRPRDRNGRRKKTKMDESTLG
SVRGRKKNLNLSSIHFSQVPPNTEQLVCASLLNRQIPIDGLPQENESLVENCKVKSTMKE
SFVGNGEQSDFVQSFPLARKELSTGPNISQESSMTPDGLLPLRAVASDRADNEEQCLPGE
GKEQLSQWSLNSNPRKRMRARMLESSDSDSNTEEDLPSLAELLGPKQPATNPQEDSNQWN
PLQNRDLEASPSSTVESSVVLPVQQSVPASQGSVDLFSTQSDSPSHRIEQIDLVETEVPS
HSSQGQMELPDRNRVEECGKQSSVEDEGDLEMKTGEPLGCLHGGSHTGELPQSSQSEILT
TQQKDTIQKDLRRIEEEMAVLEAALKGQGSPEGGSSSRRLACLLGQGAEGEPGLLSVAKL
GIGTTKQSGSSGACDASGPIPNPREGAGSLPLPAAGVLTSRTSPGAGEARGRLAARRVSA
DRGAARGRMVLVGSGLDRSELIMVQKFARKMDGTLAAQVTPGTTHVIMKTDPELVCERTL
KYFLGIAGRMWVVSFLWIRECFRQGQLLDEAAFEVKGDVINGRNHQGPRRARTATREELL
LSNYEICCHGSFTDMTTGQLEWMVELCGATVAKEPFLFTYNPELIQVVVVQPEAEESQTD
YKALQRKYSARVVTREWVLDSVALYSCQALDSYLVKPLS
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccgacatgcaaagttgaagatgtcaagcaagtggtgtcaatgatacgcagg
aacctggagtgccctatttgcctggacttattgagagacccggtttctacaagatgtgac
caccagttttgcaggatgtgcatgctgaaacacctgagtggaagcaagagggctggggca
cagtgcccgctctgcaaggctgaagtcactaaaagaagcttgcaggacagctctcgtttt
aaacagcttgtggaggccctgcagagaactatccatgcttttgagcaggacactgggacg
aagtttttcaccagccccaggatattgatttctgctcctgaaacaaaacgttgtgaagaa
ttgtgggaagagaagggcgctccgcagagcccggtcggcaggaacagggcaaagagagcc
actgcaagtaaagcttctaaaagaccagagggggaaggacagcctgccgctagccgtggt
caggacgtttctgggactagtaaaaatcgggcacaagggagtctcttgccattgcagctc
gacttctcagaagtgctcttggagcagaaaaatggattgggcgctcctgacctcgggctc
acggaagcacaggccatcgggaccaagactcgggccgagtcttcagcctgcgagaggctg
ggtggtagaatcaccgacagcgagtcccagcaggagcttgaggcagcgatttcctctgct
gctgcagagggttttgcaaaacttatggatctggatgattcttcttactttgcgaactct
gggacggcagtagctggctcctccgagccaacaactcaagaccgggagaggagtgctgca
gacgtgactgacccagtgatcccggtccgtctgcacatgggtaataaccgggacctcacc
tcctcacgggaagaggaagagcatagtttcgtttctgccagcaaagatgtgaaggatagt
gaacacctagccagcagaaagaagaattatctgtcttctaatgaccaggacccttcaggt
gaaaataaaacctttgacgtgagtgaaaaaagtaagactaacaacaaagacaacagtcta
caaagtgcagagaatttaaaagcgtccgattttgcccaggtctcttccaataagatcttg
gaaaagagacggaagaccagtgtccagaaggtcatggattggctctccaggatcgatgaa
aaggcttgttttccagaagaggagaacagacctgctgagacaccctctgatgcagattct
cttttagaagaggtaaagagtaatgagtctgatggggattcctcagctactgagaaatgt
gatgagctggtccaggagtgtgttgagagtcttaaaaagactgatcgcaggagcacccta
gaagatcaggtctttggggttgtctacaagagagcgcggagaaccagtgctcagctgaac
aagagcttttcgtctgacaggaaaggtgtggaagtgttttcttcaagctcaagcaaagag
catcaggccaacaagaaagtgtgtaagagaaagtccaatgagctgacaccagctgacttc
ataaagaggccttcccccgtggctgaaacgagcgacgccacatcccagcctgcaagaagc
gatgcagggggccgtgttcgaagtgagagtctacatgtgcttgtctcagatggaaatcag
ccagagatagaacaaagaccctcaccctctcagagaactgccagggctgaaacaacacag
gcaggaggttcctggaaggatgaggaagaggatttgcagccagaccgtcaggagaggaaa
ggaaagaaaagcaaacccaatacaaaggataacaggaagaggaatgcactgactagaaag
aaggccatcaaggcagcaaaacccctagacctagtcagctgccagcaaaacaatactggt
caagatgcagacagtgctggcccatggaaacctaccattaatgagacggaagcacagatt
gagagctacccaagcagtgaggaacctgcaggtagagctggagagccccatgctacacga
agaagcagaagactccagcttttaacagaaaaggttcggtgtactggcagaaggctcaga
actgaagactctgagttggaaagggatccccaagctcctgatcagtctgaaaacggtcag
tgtttgctcacatcagatcaagctggaatgctgacttgtaagggagttgagcagctgtgt
gaaagtagtgaaaaagagaatgagacaacagaagttttgaaagtatcagaaggttatgag
gacattcagcaacaaagcgggcatattgtggttgagagttctctggtttccatcatccgc
aatgcagaatctccttgcaactccaataaagcattcaaaggtgaccaattagttccatcc
gctcttgatatctcagaaggaccggacacaggatctgatgtggctgtgatggacgagtta
cttccaggggaactgacggaaggaaaaaatgacagtgaactggagactgaacagattctg
aaaacattcaagatatcgaaaagaaggtcctttaacttgctgccaagtcctgagtaccca
tcccaggagagcgagttttgtgacaataaagcatcagaaaaaaatgaaaatccagaagaa
gaaaaaggacaagtaaatgtagcagttgagaggaccagtctgcagtctgagaaagaactg
gattcatcttgtgtgaaagagccagcagagacacctgggacaaacttggaacagccagaa
aaacctgagactttaaggaatgagcaatactctgcatccagacatgttgaaactgagaac
tctggctgtactgatataattccaccaacaaaacctgcctcccccaggccagtgtctttt
gacagttgcagaaatgttgacataaaatctggtcagaccctttttgctgatgtttctgaa
gctgacaagatcagtgacggctccacttccaccttctcgtcgatttgcacggacagtcag
agacccagagacaggaatggcaggcggaagaagacaaagatggatgagtctactctgggt
agtgtgagaggaaggaagaaaaatttgaatcttagttcgatacatttttcacaggtccca
cctaacacggagcagctcgtctgtgcttcacttctgaacaggcaaattcccattgacggt
ttaccccaggaaaatgagtcattagtggaaaactgtaaagtaaagagtacaatgaaagaa
agctttgtgggcaacggagaacaaagtgactttgtgcaaagttttccacttgcaaggaag
gaactttccactgggccaaacatctcgcaggagtcatctatgacccctgatggccttttg
cccttacgagctgttgctagtgacagagcagacaatgaagagcagtgtctaccaggtgaa
ggcaaagagcagctgagccagtggtcactgaattccaacccaaggaagagaatgagggcc
cgaatgctggagtcatcagactcagactcaaatactgaggaagatcttccatcccttgca
gagctacttgggccaaagcagccagctactaaccctcaagaagactctaaccaatggaat
ccccttcagaatcgtgacctcgaagcctctccttctagtactgttgagtcatctgtggtt
ttacctgttcagcagagcgttcctgcaagtcagggctctgtagatctattttcaactcag
tctgacagtcccagccatcgcatagagcagatagacctggtagaaaccgaggttcctagt
cacagcagccaaggccagatggagctgcccgataggaaccgcgtagaagagtgtggcaag
cagagcagtgtggaagacgaaggcgatttagagatgaagacaggtgagcccctgggttgc
ttgcatggaggcagccacactggagagttgccacagtcttctcagagtgaaatcctcacc
acccagcaaaaagacaccatccagaaggacctgaggaggatcgaagaggagatggctgtg
ctggaggcagcgctgaagggtcaggggagtccagagggcggctcatcttccaggaggctg
gcctgtctgctggggcagggcgctgaaggagagccagggctgttgagtgtggcaaagctg
ggaatcgggaccaccaagcagtctggaagcagcggagcttgtgatgcctcgggcccaatt
ccgaaccccagggaaggagccggatcactgccgctccctgccgcgggagtcttgacaagc
aggaccagtcccggggctggtgaggcacgtggccggctggctgcccgcagggtctctgcg
gacaggggcgccgccaggggcaggatggtgcttgtgggctccgggctggacaggagtgag
ctgatcatggtgcagaaatttgcaaggaaaatggatggaaccctcgcagcacaggtgacc
cctgggaccacacacgtcatcatgaaaactgatccggagctggtctgcgagaggacactg
aagtacttcctgggaatcgctgggcggatgtgggtggtcagcttcctgtggatcagggag
tgcttcaggcaaggacagctgctggatgaggctgccttcgaggtgaaaggagacgtgatc
aatggcagaaatcaccagggacccagaagagctcggacagccacaagggaagaacttctt
ctgagcaactatgagatctgctgccatggatcatttacagatatgaccacagggcagctg
gagtggatggtggagctctgtggagcaactgtggctaaagaacccttcctcttcacctat
aacccggagctcatccaagtggttgtggtgcagcccgaagcagaggaatcacagacagat
tacaaagctctccagaggaagtacagtgccagagtcgtgacaagagagtgggtgctggac
agtgtggctctttacagctgccaggccttggactcttacttggtgaagccactcagctga
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integrated database retrieval system
