Legionella oakridgensis: Loa_01236
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Entry
Loa_01236 CDS
T03928
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lok
Legionella oakridgensis
Pathway
lok03030
DNA replication
lok03410
Base excision repair
lok03420
Nucleotide excision repair
lok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Loa_01236
03410 Base excision repair
Loa_01236
03420 Nucleotide excision repair
Loa_01236
03430 Mismatch repair
Loa_01236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lok03032
]
Loa_01236
03400 DNA repair and recombination proteins [BR:
lok03400
]
Loa_01236
Enzymes [BR:
lok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Loa_01236
DNA replication proteins [BR:
lok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Loa_01236
DNA repair and recombination proteins [BR:
lok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Loa_01236
NER (nucleotide excision repair)
GGR (global genome repair) factors
Loa_01236
MMR (mismatch excision repair)
DNA ligase
Loa_01236
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Loa_01236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AHE66790
UniProt:
W0BAD1
LinkDB
All DBs
Position
1142379..1143773
Genome browser
AA seq
464 aa
AA seq
DB search
MNPAVTASRPLAIYCYGIGAVSDEYSFPDSHRQQLECLRRMGFRVAYDEIKTARGLQGCL
AYYERMLASRAALPYEIDGVVYKVDSAVLQEKLGFVARAPRFACAHKFPASEEMTTLLAV
DFQVGRTGALTPVARLKPVSVAGVTVSNATLHNMDEIERKDIHIGDVVVIRRAGDVIPEV
VSVVKEKRPKETQIIHLPTHCPVCGADVIREEDEAVARCTGGLFCKAQLKRMVWHYASRK
AMAIDGLGDVLIEQLVDRSRLNDVSDLYTLTKEELAQLPRMGKKSAENLVNSIEKSKKTT
FQRFLYALGIREIGEASAHILSENFSDIKALKQATIEELTKLKDIGPVVASHVVHFFAQT
HNMEVIHKLLDYGVHWPVEERKKIDTHHPLYDKTVVLTGTLTAMSRDEAKSRLVALGARV
SGSVSAKTDYVIAGEDSGSKLNKATALGVRVLSEDELLNMMSLQ
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttgaatccggcagtaaccgcaagcagacccttggccatttattgttatggtattggggca
gtcagcgacgaatattcttttcctgatagtcataggcaacaattggaatgtttgcggcgc
atgggatttagggtggcctatgacgaaattaaaactgctcggggactgcaaggctgcctt
gcgtattatgagcgtatgctggcatctcgagcagcgttgccttatgaaattgatggggta
gtttataaggttgacagtgcggttttgcaggaaaaattgggttttgttgcgcgtgcgcca
cggtttgcctgcgctcacaagtttcctgccagtgaggagatgaccacgttgctggccgtt
gattttcaagtaggaagaacgggggcgttaacgcccgttgcccggttaaaaccggtcagt
gtggcaggtgttacggtgagtaatgcaacattgcacaacatggatgaaattgaacgtaaa
gacattcatataggcgatgtggtggttattcgtcgggcaggtgacgttattccagaagtg
gtttctgttgttaaggaaaaaaggcctaaagagacacaaattattcatttgccaacccat
tgcccggtgtgcggtgccgatgttatccgtgaggaagatgaagccgttgctcgctgtact
ggtggtttgttttgtaaagcgcaattaaagcgaatggtgtggcattatgcgtctcgcaaa
gcaatggccatcgatggcttgggcgatgtgctgattgaacaattggtcgatagaagccgg
ttaaacgatgtatccgatttgtataccttgacgaaggaggaattggctcaattgccgagg
atggggaaaaaatcggctgagaatttggtgaactccatcgagaaaagcaagaaaacgacg
tttcaacgatttctctatgctttgggcatacgcgaaattggtgaagcgagcgcccatatt
ctttcagaaaatttttccgatataaaagcacttaaacaagcaaccatagaagaattaacg
aaattaaaagacattgggccggttgtcgcatcgcatgtggtgcatttttttgcgcagacc
cataatatggaggtcatccataaacttctggactatggcgtgcattggccggttgaagaa
agaaagaaaatagacactcatcatccactgtatgataaaacggtggttttgactggtacg
ttaactgcgatgagtcgtgacgaagcaaagtcacggctcgtggcgttaggagctcgggtg
agtggcagtgtttcggcgaaaacagattatgtcatcgccggggaggattcaggttccaaa
ctcaataaagcgacggcgcttggtgtgcgtgtgttgagtgaggatgagttgcttaacatg
atgtcactgcaataa
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