Lacticaseibacillus pabuli: PQ472_04255
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Entry
PQ472_04255 CDS
T09936
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpab
Lacticaseibacillus pabuli
Pathway
lpab03030
DNA replication
lpab03410
Base excision repair
lpab03420
Nucleotide excision repair
lpab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ472_04255 (ligA)
03410 Base excision repair
PQ472_04255 (ligA)
03420 Nucleotide excision repair
PQ472_04255 (ligA)
03430 Mismatch repair
PQ472_04255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpab03032
]
PQ472_04255 (ligA)
03400 DNA repair and recombination proteins [BR:
lpab03400
]
PQ472_04255 (ligA)
Enzymes [BR:
lpab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PQ472_04255 (ligA)
DNA replication proteins [BR:
lpab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PQ472_04255 (ligA)
DNA repair and recombination proteins [BR:
lpab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PQ472_04255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQ472_04255 (ligA)
MMR (mismatch excision repair)
DNA ligase
PQ472_04255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PQ472_04255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
HHH_3
Zn_ribbon_NUD
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WDF83455
UniProt:
A0ABY7WZX5
LinkDB
All DBs
Position
934540..936549
Genome browser
AA seq
669 aa
AA seq
DB search
MADKDASLAQEAAQLRTQLNKWRDEYYTRDQPSVTDAEYDKQYRRLEEIEGAHPEFVTPD
SPTQQVGDTTLPELGKVPHEQPMLSMGDVFSLDELRDWNDRMAENIATKPEYNVELKIDG
LSLSLVYQGGKLVQGSTRGNGRIGEDVTANVRTITDIPQTLPEALDIEVRGECYMPKAAF
AKLNAAREAQGLETFANPRNAAAGSLRQLDPKITGDRQLATFMYTVVDPERYNLTTQDEA
IAFMAKLGFATNQSSEKLADISQIDDYIERYTGSRDQLTFGIDGIVLKVNDLATQAELGA
TVKVPRWEIAYKFPPEESATIVHDIEWTIGRTGVVTPTAVMDPVQLAGTTVSRATLHNPD
FIAAKDIRIGDTVMLHKAGDIIPEISTVLLDKRPADSQPYEVPTHCPSCGAELVHIEDEV
ALRCINPLCPAQVQEQLTHFASRPAMNIDGLGPKIIAQLQEKKMVKDVADLYVLTADDLA
QLDKFKEKSIAKLLQAIDNSRHNSVERLLTGLGIRHVGAKAAAVLAEHFGSLDAIADASE
EELAEVEGLGPIIAHAVAQYFAMPETSELLGQLRTAGVNLQYTTAAAPAADDSFVSGKTV
VITGKFNDFTRPELTARLKQLGAKVTGSVSKKTDLLVAGEAAGSKLAKATDLGVTVMSEA
ELKAQLTEE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaggacgcgagtctcgcgcaagaggcggcacagctgcgcacacaactgaac
aagtggcgtgacgaatactacacgcgggatcagccaagtgtgacggatgccgagtatgac
aagcagtaccgccgtttggaagagattgagggtgcccatccggaatttgtgacccctgac
tcgccaacacaacaggttggggacacgaccctacccgaattgggcaaggtgccgcatgag
cagccgatgctgtcgatgggggatgtcttttccttagatgaattgcgcgactggaacgac
cggatggcggagaacattgcgaccaagccagagtataacgttgagctgaagattgacggg
ctgtccttgtccctggtctaccaaggcggaaagctcgttcagggcagcacccggggcaac
ggacgtatcggggaggatgtcacggctaacgtgcgcaccattactgatatcccgcagacc
ttgccggaagcactggatatcgaagtgcgcggtgagtgctacatgcccaaagccgcgttt
gcaaaactgaacgcagcacgcgaggcacagggacttgaaacctttgccaacccgcggaat
gcggcggcgggatccttgcgtcagctcgatccaaagattacgggtgaccgccagctggcg
accttcatgtatacagtggtggatcctgagcgctacaatctgaccacgcaggacgaagcc
atcgcattcatggccaaactcggatttgcgacgaaccagtcatctgaaaagctggcggat
attagccaaattgacgattacatcgaacgctacactggcagccgcgaccagttgaccttt
gggattgacggcattgtgctgaaggtgaacgacttggcaactcaggccgaactcggtgcc
accgttaaagtgccacgctgggaaattgcctacaagtttccacccgaggagtccgcgacg
attgtgcacgatattgaatggaccattggccgtactggggtcgtgaccccaaccgcagtg
atggatccggtacaacttgcgggcacgacggtctcacgcgccaccttgcacaatcctgat
ttcatcgctgccaaggacattcgcattggcgatacagtgatgctgcataaggcgggggac
attatccctgaaatttcgaccgttcttctggataagcggccggctgacagtcagccctat
gaggtgccgacgcactgcccatcttgtggtgccgaactggtccacattgaggatgaagtg
gcgttgcgctgcattaacccactgtgtcccgctcaggtgcaggaacagctgacgcacttt
gccagtcgtcccgcgatgaacattgatggcttgggacccaagattattgcacagctgcag
gagaagaagatggtcaaggatgtcgctgatttgtacgtgctgacggcagatgatttggcc
caacttgataagtttaaggaaaaatctattgctaagctcttgcaggccatcgacaatagc
aggcataattcagttgaacgcctgttaaccggtttaggcattcggcacgtgggcgccaaa
gcggcggcggttttagctgagcactttggtagtctcgatgccattgcggacgcgagcgaa
gaggagctggccgaggtcgaagggcttgggccaatcatcgcgcacgcggttgcacagtat
tttgccatgccggaaacaagcgaacttctgggccagttgcggactgcgggtgtgaacctg
cagtacacgacggccgctgcacctgcagcggatgacagctttgttagcggcaagacggtg
gtcatcacgggtaagttcaacgatttcacccgaccggaattgacggcccggctcaagcag
ttgggtgctaaggtgacggggtctgtttctaagaagacggacctgcttgttgcgggtgaa
gccgcggggagtaaactcgctaaggcgaccgacttaggcgtcacggtcatgagtgaagcc
gaattaaaagcacaattaaccgaggaataa
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