Lacticaseibacillus parahuelsenbergensis: LACPH_000974
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Entry
LACPH_000974 CDS
T10275
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpah Lacticaseibacillus parahuelsenbergensis
Pathway
lpah03030
DNA replication
lpah03410
Base excision repair
lpah03420
Nucleotide excision repair
lpah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LACPH_000974 (ligA)
03410 Base excision repair
LACPH_000974 (ligA)
03420 Nucleotide excision repair
LACPH_000974 (ligA)
03430 Mismatch repair
LACPH_000974 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpah03032
]
LACPH_000974 (ligA)
03400 DNA repair and recombination proteins [BR:
lpah03400
]
LACPH_000974 (ligA)
Enzymes [BR:
lpah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LACPH_000974 (ligA)
DNA replication proteins [BR:
lpah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LACPH_000974 (ligA)
DNA repair and recombination proteins [BR:
lpah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LACPH_000974 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LACPH_000974 (ligA)
MMR (mismatch excision repair)
DNA ligase
LACPH_000974 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LACPH_000974 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH_8
HHH
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WLV78947
LinkDB
All DBs
Position
1003583..1005607
Genome browser
AA seq
674 aa
AA seq
DB search
MLTKPAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFP
KLVTPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQANVGHPVDYNV
ELKIDGLALSLIYEDGKLVQGSTRGDGNIGEDVTKNVLTIDSVPKTLKKPLSLEVRGECY
MPKAAFAKLNARQETEGNPPFANPRNAAAGSLRQLNPRVTAGRELDTFIYTLIDPDRFNV
KTQHEAIAFMHDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKVNDLAL
QAQLGNTVKVPRWEIAYKFPPEEAETVIHEIVWTVGRTGVVTPTAVMDPVQLAGTTVSRA
TLHNADMIHDKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPANTPPTPIPEKCPSCGQKLV
HLDDEVALRCINPMCPAQMQEQLTHFASRNAMNIDGLGPKIIAQLQAKHLVRDVADLYRL
TATDLAQLDKFKEKSINNLLSAIHNSRQNSVERLIFGLGIRHVGGKAARILAEHFGDLDH
LMAASQEDIAEIPNIGPTIAEAVVTYFKTDTVRKLIDQLRSAGVNLRYTGPTQSAVKDSF
VSGKTVVITGKFAEFSRPDLTKQLEKLGAKVTGSVSKKTDLVIVGEAAGSKLTKAQKLNV
PTMDETELLANLKN
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgttaacaaaaccagctgctcaatttacgcttgaagaagccgaggcggaagtcgccaag
ctgcgcaagcaattaaatcaatggcgtctggagtattacaccaaagacgcaccgaccgta
acggataacgtttatgacgatcattatcgtgacttgcaggcgttagaagcggcatttcct
aaactggtcacccccgattcgccgacgcaacaggttggcgatgtgatcaactcggatttt
gccaaagttcagcatccgatccctatgttgtcgatgggcgatgtcttttcatttgaagaa
cttagcgaatgggatgcgcgcatgcaggctaatgttgggcatccggttgattataatgtg
gagttaaaaattgatggacttgccttatcgcttatttatgaagatggcaagttagtccaa
ggctcgacgcgtggtgatggtaacattggcgaagatgttaccaagaatgtgctaacgatt
gattcggtaccgaaaaccttgaaaaagccactgtcactcgaagtacgcggtgaatgctat
atgcctaaagcggcgtttgccaaattgaatgcccggcaggaaactgaaggcaatccgcca
tttgccaatccacgtaatgcggccgcgggctccttgcgtcagctaaatccgcgtgtcacg
gccggccgggaactggacacgtttatttacacgttgattgatcctgatcggtttaacgtg
aaaacgcaacatgaagcgattgcgttcatgcatgatttgggctttaccaccaatcccagt
tcggaagtcgccagtgatatgcaggcgattgatgcgtacattactaagtacacaagtgat
cgcgatgcgttgccgtatggaattgatgggatcgttttaaaagtcaatgacttggcgctg
caagcccagttaggtaacacggttaaagtgccgcggtgggaaattgcgtataagtttccg
cctgaagaagccgagacagtaatccatgaaatcgtctggactgtcggtcgaaccggggtt
gtcacgccgactgcggtgatggatccggttcagctggcggggacgacggtttcgcgggca
accttacacaatgcggatatgattcatgataaagacattcgcattggcgatacggtcatg
ctgcataaagctggcgacattatcccggaagtttcgcgggtgttggttgccaagcgcccg
gcgaatacgccaccgacgccaattccggaaaaatgtccgtcgtgcggtcagaaactagtg
cacctcgatgatgaagtggcgttgcggtgcattaatccgatgtgtccggcacaaatgcag
gagcagctgacacattttgcttcgcgtaacgccatgaacattgacggtttgggtcctaaa
atcattgcgcagctgcaggccaaacacctggtgcgggatgtcgccgatctctaccgcctg
actgcaaccgatctggctcagctggacaaattcaaagaaaaatcaattaataatttatta
agtgcgattcataacagtcggcaaaattccgtggaacgcctaatctttggattggggatt
cgtcacgttggcgggaaagccgcgcgaattcttgcggaacattttggcgacttggatcac
ctgatggctgccagtcaggaagacattgcggagattcctaatattgggccgactattgcc
gaagccgttgtgacctatttcaagactgatacggtacgaaagctgatcgatcaattgcgt
tctgcaggggtcaacctacgttataccggtccaacgcagtccgcggtaaaagacagcttt
gtttccgggaaaaccgtggtcatcacaggtaaatttgccgagttttcccgcccggatctg
acgaaacagcttgaaaaattaggcgccaaagttaccggatcggtttcaaagaaaacggat
ttggtgattgtcggtgaagcagctggcagtaagctgacgaaagcccagaaattaaatgtt
ccgacgatggatgaaacagaattgttggcgaacttgaagaattga
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