Leishmania panamensis: LPMP_301390
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Entry
LPMP_301390 CDS
T06539
Symbol
ABCH3
Name
(RefSeq) ABC transporter, putative
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lpan
Leishmania panamensis
Pathway
lpan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPMP_301390 (ABCH3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpan03019
]
LPMP_301390 (ABCH3)
Messenger RNA biogenesis [BR:
lpan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LPMP_301390 (ABCH3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_16
AAA_29
AAA_23
RsgA_GTPase
Dynamin_N
AAA_24
VapE-like_dom
AAA_28
ATP-synt_ab
FtsK_SpoIIIE
AAA_15
Motif
Other DBs
NCBI-GeneID:
22577192
NCBI-ProteinID:
XP_010701168
UniProt:
A0A088RW32
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All DBs
Position
30:445289..446710
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AA seq
473 aa
AA seq
DB search
MIGAPWPPESVFGSTVERVASPAPVPERKTSLAEALRLRLSDFVEKMSSGEKRRVQILHG
MLYPAMVHLLDECSTDIDVAERHTVLELVRQECEAKGGCCVYATHILDRIKGWATHLLLM
EGGRVVDFKAVADITVPLEDYAFQFMSKRSGSARGAAAVSALPLSYGKFMTISPASSTCP
MTSAATSLSSATVSVPVTFWPQEKRDDSPSEVVIDCVHLTYKNVFANLSFQVFRGERVLL
CGGNGSGKSTLLNMLGGKQFFDNRHGALSVLGKRCYDGMLLNSLVSYGGDWWTAVPGGEV
HVREMLQLRTSRAEHLREMLAVDMDWDVRHISSGEQRRVQLLLHLLEDKPVVLLDEATAD
LDIDQRHCLMQFLYEESVQRGVTVVYSTHIFGGLEGWADVVVLLDRTVRGLHAVWRASKG
QSISLERVADEIVALRAREVSWATPFPTMDDTVAHAREAACPPAAITGNYASC
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgattggtgctccatggccccccgagtcggtgttcggcagcactgtggagcgcgtggcc
tcgccggcgccggtgccagagcgcaagacgagcctcgccgaggcgctgcgcctacgtctc
tccgactttgtggaaaagatgagctcgggagaaaagaggcgggttcagattctgcatggc
atgctctaccccgccatggtgcacctcctcgacgagtgcagcactgacatcgacgtcgcg
gagcggcacacggtgctggaactggtacggcaggagtgcgaggcgaagggcggatgctgt
gtgtatgcgacccacatcctagaccgaattaaaggctgggccactcacctgctactcatg
gaggggggccgcgtggtggatttcaaggcagtggcagacatcaccgttcccttggaagac
tacgcgtttcagttcatgagcaagcgcagcggcagtgctcgcggcgccgccgcagtgtca
gcactgccattgtcgtacgggaagtttatgaccatatcacccgcatcttcaacgtgtcca
atgacatccgcagccacctccctatcctctgcgacagtcagtgtgccggtcacgttctgg
ccccaagagaaaagggacgacagcccaagcgaagtcgtcatcgactgtgtgcacttgacc
tacaagaatgtgtttgcaaacctgtcgtttcaggtgttccgtggtgagcgggtgttgctg
tgcggcggtaacggctctggcaaatccaccttactgaacatgcttggtgggaagcagttc
tttgacaatcgccacggcgctctctccgtgctcggtaagcgctgctacgatggcatgctg
ctgaacagtcttgtcagctacggcggagattggtggaccgccgtgccaggtggtgaggtg
cacgtgcgagaaatgctgcagctacggacgtctcgtgccgagcacttgcgtgagatgctc
gccgtggacatggactgggatgtgcggcacatcagctctggggagcagaggcgtgtgcag
ctgctcttgcacttgttggaggacaaacctgtcgtgctgcttgatgaggcgaccgctgac
ttggacattgatcagcgccactgcctcatgcagttcctctacgaagagagcgtgcagcgc
ggggtgacagtcgtctactcgacacacattttcggagggctggagggctgggccgacgtc
gtggtgctgctggaccgcacagtacgcggtcttcatgctgtgtggcgtgcctctaagggg
cagtccatctcactggaacgtgtcgctgatgaaatcgttgcactcagggcgcgagaggtt
tcttgggcaacaccattccccactatggacgacacagttgcacatgcgcgcgaagccgct
tgtcccccggctgcaattacgggcaactatgccagttgctga
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