Limosilactobacillus panis: KZE55_07550
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Entry
KZE55_07550 CDS
T07939
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpas
Limosilactobacillus panis
Pathway
lpas03030
DNA replication
lpas03410
Base excision repair
lpas03420
Nucleotide excision repair
lpas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KZE55_07550 (ligA)
03410 Base excision repair
KZE55_07550 (ligA)
03420 Nucleotide excision repair
KZE55_07550 (ligA)
03430 Mismatch repair
KZE55_07550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpas03032
]
KZE55_07550 (ligA)
03400 DNA repair and recombination proteins [BR:
lpas03400
]
KZE55_07550 (ligA)
Enzymes [BR:
lpas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KZE55_07550 (ligA)
DNA replication proteins [BR:
lpas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KZE55_07550 (ligA)
DNA repair and recombination proteins [BR:
lpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KZE55_07550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KZE55_07550 (ligA)
MMR (mismatch excision repair)
DNA ligase
KZE55_07550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KZE55_07550 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Nlig-Ia
Hydrolase_6
HHH
Ish1
Zn_ribbon_NUD
UPF0758_N
DUF4796_N
BRCT_2
RUBY_RBDX
RNA_pol_A_CTD
HMBD
Motif
Other DBs
NCBI-ProteinID:
QZN92631
LinkDB
All DBs
Position
complement(1565191..1567230)
Genome browser
AA seq
679 aa
AA seq
DB search
MDKQIPVDQLTLAAAKQEIVPLRKQLTQWGKEYYEQDNPTVEDYVYDRAYQRLVALEQRF
PELKTSDSPTQRVGGGPQSQLTKVTHDIPMLSMGDVFSIDELMDFNQRQQDNKDVEVAPE
YNLELKIDGLSLSLVYENGKLVQGSTRGNGVIGEDVTANVMTIKSVPHELPEPLSLEFRG
ECYMPKKSFVKLNQEREAAGQPIFANPRNAAAGSLRQLDPHVTAKRDLDTFMYYVPEYQK
LGVKTQAAALDRMRELGFNVNPNNRVVHNRQEITAYIEEYTAKRDQLSYGIDGIVEKVND
LDTEIALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQLAGTTV
SRASLHNPDYLQEKGIRVGDTVYLHKAGDIIPEISRVDLKKRPADSKPYEIPTTCPVCGA
KLVHLDDEVALRCINPMCPAQIKEGLAHFASRNAMDIDGLGPKIIQQLWNKKLIHDVADL
YSLTRDQLLTLDKFGDKSATNLLTSIDNSRNNSVERLLFGLGIRHVGAKAARLIMEHFGS
LDQLMAASADEVSAVDGIGPTIGESVEAYFANPQVVKLVDELRDAGINFAYLGATTPVNP
TSEWNDRRVVLTGKLEEMTRSQAKDWLEAHGAKVTSSVSKKTDIVIAGTAAGSKLTKAQD
LGITVWNEARFAQAMKEEQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggataagcaaataccagtcgaccagctaaccctggcggcggccaaacaagaaattgtt
cccctgagaaagcagttaacccagtggggcaaggagtactacgaacaggacaacccaacc
gttgaggactacgtctatgacagggcctaccaacgtttggtagccctggaacagcgtttt
ccggagctgaagacgagcgattcgccaacgcaacgggttgggggtggcccccaaagtcag
ttaacgaaggtgacccatgatatcccgatgctgtcaatgggtgacgtcttctccattgat
gagttgatggacttcaaccagcggcaacaggataataaagacgttgaagtggcgcctgag
tataaccttgaattaaagattgatggtctttccttatccttagtttatgaaaacggcaag
ttagttcagggttcaactcgggggaacggggtcattggtgaagatgtcaccgccaacgtg
atgacgattaagtcggttccccacgaactacccgaacccctttcccttgaattccgtggt
gagtgctacatgccgaagaagtcttttgttaagctcaaccaagaacgggaggcggctggt
caaccaatctttgctaacccgcggaatgcggcggcggggagccttcgccagcttgacccg
cacgtgacggctaagcgggatttggatacctttatgtactatgttcctgagtatcagaag
ctgggcgttaagacccaggcggcagccctcgaccggatgcgggaactcggctttaacgtc
aacccgaataaccgggtcgttcataaccgccaggagatcaccgcctacattgaggaatac
acggccaaacgggaccagctttcctacgggattgacggaatcgtggaaaaggtcaatgac
cttgacactgagattgccctcgggaataccgttaaggttccccgctgggaaattgcctac
aagttcccacctgaggagcaggcgacggtggtcagagatattgaatggacggttgggcgg
accggtaatgttacaccgactgcggtgatggatccggttcaactggcggggaccacggtg
agtcgtgcttctctccataatcccgactacctccaggagaaggggattcgggtcggcgac
accgtttacctccacaaggcaggcgacattattcctgaaatctcccgggtcgacctgaaa
aagcggccggctgatagtaaaccatacgagattccgacaacctgcccagtctgcggcgcc
aagttggtccacttagacgatgaggttgccttgcggtgcatcaacccgatgtgtccggcc
caaattaaggaggggttggcccacttcgcctctcggaacgcgatggacatcgatggctta
ggaccgaaaattatccagcagctctggaacaagaagttaattcatgacgtggctgacctg
tacagcctgacgcgggaccaattattaactttagataaatttggtgacaaatccgccact
aacctattgacatcgattgacaatagtcgtaataattctgtcgaacgcttattatttggt
ctcggtattcgccatgttggtgctaaggcggcccggctgatcatggagcattttggctcc
ctcgaccagttgatggcagcaagcgctgatgaggtttccgcggttgatggcatcggcccc
accattggtgagagtgtggaagcctactttgctaacccccaagtagtcaagctggttgat
gaactccgggatgccggcattaatttcgcttacctgggggccaccacaccagtcaaccca
acaagcgaatggaacgaccgccgggtagttttgaccgggaagctggaagaaatgacccgg
agtcaggcgaaggattggctagaagcacatggggcaaaggttactagcagcgtttcaaag
aaaactgatattgtcattgccgggacggcagcgggaagcaaactgacgaaagcccaggac
ctgggaatcacggtttggaatgaggcccgctttgcccaagcaatgaaggaggaacaataa
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