Lacipirellula parvula: PLANPX_1772
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Entry
PLANPX_1772 CDS
T06590
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpav
Lacipirellula parvula
Pathway
lpav03030
DNA replication
lpav03410
Base excision repair
lpav03420
Nucleotide excision repair
lpav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PLANPX_1772
03410 Base excision repair
PLANPX_1772
03420 Nucleotide excision repair
PLANPX_1772
03430 Mismatch repair
PLANPX_1772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpav03032
]
PLANPX_1772
03400 DNA repair and recombination proteins [BR:
lpav03400
]
PLANPX_1772
Enzymes [BR:
lpav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PLANPX_1772
DNA replication proteins [BR:
lpav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PLANPX_1772
DNA repair and recombination proteins [BR:
lpav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PLANPX_1772
NER (nucleotide excision repair)
GGR (global genome repair) factors
PLANPX_1772
MMR (mismatch excision repair)
DNA ligase
PLANPX_1772
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PLANPX_1772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
SHLD2_C
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
BBO32160
UniProt:
A0A5K7X6F7
LinkDB
All DBs
Position
2001933..2003948
Genome browser
AA seq
671 aa
AA seq
DB search
MPDDIQQQLDALRTEIRAHDRAYYVAATPTITDLQYDRLLNRLKELEAAHPELVTPDSPT
QRVGDAPIPELNSVVHRIPMMSMDNTYSLEELQQYGERIAKLLPGEGVGWDVELKIDGVA
ISIVYENGLLVQAATRGDGQTGDDVTHNIRTIADIPLRLAGDELPPVVEVRGEVYMTNTD
LADINAKRQEAGQKLYANTRNTAAGAVRLLDPRLAAQLRLRFFCHGVGYSEGLTAESHSE
FLKLARQWGIPVTPLVERFDDFAAAAAHCDSMIARLHDFDFEVDGLVLKVDRFDQRTRLG
ATSKAPRWLVAYKFEKYEATTKVNNIFITVGKSGALTPTADLEPVQIAGTTVSRAGLHNI
EEIARKDVRVGDTVIVEKAGKIIPHIVRVEKHLRPEDAVPFIYPTHCPECGSELEKDEGG
VFIRCLNPACPAQLGQRLLYFASRSAMDIEGLGEKLAEQLIAEKYVDDLADLYSLTVERL
TQLERMGTKSAQNLVDNIAASKSRGLARVLNALSIRHIGVRSAATLAGYFGNIDDMLAAT
AEELAAVEDIGPIIAASIHDFLHNDAGMRAIDQLRTAGVDMTAPKKERAPEGLLTGKTVV
VTGTLEKYTREQIEELIEAHGGKAGKSVSKKTAYLVAGAEAGSKLAKAESLGVPVITEEA
FEQLIAGEPPA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgacatccaacagcaactcgacgctcttcgaaccgagatccgcgcacacgat
cgcgcgtactacgtcgccgcgacgccgacgattaccgatctccagtacgatcgcctgcta
aatcggctgaaggaactcgaagcggcccatccggaactcgtgacgcccgatagtccgacg
cagcgcgtcggcgatgcgccgatccctgaactgaactcggttgtccaccgcatcccgatg
atgtcgatggataacacctacagcctcgaagagttgcagcagtacggcgaacggatcgcg
aaactgctccccggtgagggggtgggctgggacgttgagctgaagatcgacggcgtggcg
atttcgatcgtctatgaaaacggcctgctagtccaagcggcgacgcgcggcgacggccag
acgggcgacgacgtcacccacaacattcgcacgattgccgacattccgctgcggctggcg
ggcgacgagcttccgccggtcgttgaggttcgcggcgaggtctacatgaccaataccgat
ctggccgatatcaacgcgaaacgccaggaagcggggcagaaactttacgccaacacccgc
aatacggcggccggcgcggtgcgcctgctcgacccacggctagcggcgcagttgaggttg
cgcttcttctgccatggcgtcggctacagcgaggggctgacggcggaatcgcattccgag
ttcctcaaactcgccagacagtggggaatccccgtgacgccgctggtggagcggttcgac
gacttcgccgctgcggcggcgcattgcgattcgatgatcgcccggctgcatgacttcgat
ttcgaagtcgacgggctcgtactgaaggtcgatcggttcgaccagcgcacccggctcggc
gcgacgagcaaggcgccgcggtggctggtcgcttacaagttcgagaaatacgaagcgacg
acgaaggtcaacaacatcttcatcaccgtcggcaaaagcggtgcgctaacgccgacggcc
gacctcgaaccagtgcaaattgccggcacgacggtcagtcgcgcaggcctgcataacatc
gaagagatcgcgcgcaaagatgttcgcgtcggcgataccgtcattgtcgagaaggcgggg
aagatcattccgcacattgttcgcgtggagaaacatcttcgcccggaagatgcggttccg
ttcatctacccgacgcactgccccgagtgcggcagcgagttggagaaggatgagggaggc
gtcttcattcgttgcttgaatcccgcttgtcctgcccaactaggacagcggctcctttat
tttgccagccgttcggcgatggatatcgaggggctcggcgaaaaactggctgagcaactc
atcgctgagaagtacgttgacgatttggcggacctatactccctcacggtcgagcgactc
actcagcttgagcggatgggaacgaaatcggcgcagaatctggtcgacaacatcgccgcc
agcaagtcccggggactcgcgcgagtgctcaacgctctttcgattcgccatatcggcgtc
cgcagcgccgccacgctggcagggtatttcggcaacatcgacgacatgctcgctgcgacg
gcggaagaattggccgccgtcgaagatatcggcccgatcatcgccgccagcattcacgac
tttctacacaacgacgccggcatgcgcgcgattgaccaactgcgcacggcaggcgtcgat
atgacggcgccaaagaaggaacgtgccccagagggcctgctgaccggcaaaacggtagtc
gttaccggtacgctcgaaaaatacacccgcgaacagatcgaggaacttatcgaagcccac
ggcggcaaagcggggaaaagcgtcagcaagaagacggcttacctcgtcgccggagccgaa
gccggcagcaaactcgccaaggccgaatcgctcggcgtgcccgtcatcaccgaagaagcc
ttcgagcaactcatcgccggcgaaccgcccgcgtag
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integrated database retrieval system
