Secundilactobacillus paracollinoides: AYR62_08075
Help
Entry
AYR62_08075 CDS
T04675
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpd
Secundilactobacillus paracollinoides
Pathway
lpd03030
DNA replication
lpd03410
Base excision repair
lpd03420
Nucleotide excision repair
lpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYR62_08075 (ligA)
03410 Base excision repair
AYR62_08075 (ligA)
03420 Nucleotide excision repair
AYR62_08075 (ligA)
03430 Mismatch repair
AYR62_08075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpd03032
]
AYR62_08075 (ligA)
03400 DNA repair and recombination proteins [BR:
lpd03400
]
AYR62_08075 (ligA)
Enzymes [BR:
lpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AYR62_08075 (ligA)
DNA replication proteins [BR:
lpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AYR62_08075 (ligA)
DNA repair and recombination proteins [BR:
lpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AYR62_08075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYR62_08075 (ligA)
MMR (mismatch excision repair)
DNA ligase
AYR62_08075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYR62_08075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-ProteinID:
ANZ64036
LinkDB
All DBs
Position
complement(1792802..1794871)
Genome browser
AA seq
689 aa
AA seq
DB search
MADKPVDQLTKDEAATLAAQLRPQLTAWGQAYYTSDAPDVEDHVYDAAYAQLVAIEATYP
DLVTADSPTQNVGGSVLTGFTKVTHDIPMLSMGDVFSEDELAGFDQRIQADADDRIAYNC
ELKIDGLAISLRYEDGLLVQGSTRGNGVIGEDITQNLKTIPSIPQKLNRPLTVEVRGECY
MPKDSFMRLNERREAEGQPVFANPRNAAAGSLRQLDSRVTADRKLSTFMYNVADFDPIDA
RTQSDMLLELTSLGFTTNPTNRVAESLDDVFAFITEYTGKRDDLPYGIDGIVIKVNSLPR
QRALGATVKDPRWEIAYKFPPEEAQTIVRDIEWTVGRTGVVTPTAVMDPVQLAGTTVARA
SLHNPDYLVEKDIRVGDTVLLHKAGDIIPEISNFVAAKRDPNSAPYVIPTHCPSCGAELV
HLDDEVALRCINPKCPAQLAEQLNHFASRNAMNIDGLGPRIIKQLFEKAYVTDVADLYRL
TFDQLVTLDKFGEKSATNLLTAIDNSRDNSLERLLFGLGIRHVGVKAGRLLAAEFGDIDA
LMAADEESIAAIASVGDTIADSVVTYFENADVQTLIDELKTLGVNMTYTGAPAEPANADG
FFNGKRVVLTGKLTQMSRPEATEWLEAQGAKVTGSVSKKTDLLIAGEDAGSKLTKAQSLS
VPVWNEARFASEMSADTANENGGNRDETN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaccagtggatcaattaacgaaggatgaggcagcaactctggccgcacag
ttacggccgcagttaactgcctggggtcaagcatattacacgagcgatgcgccggatgtt
gaagatcacgtatacgacgcagcgtatgcccaacttgtggccattgaagcgacctacccg
gacctggtcacagcggattcaccaacccaaaacgttggcgggtcagtactgaccgggttt
acgaaggtaacgcacgacattcccatgctttcaatgggggatgtcttctcagaggacgaa
ctggctggctttgatcagcggattcaagcggatgcggacgaccgaatcgcttataattgt
gaattaaaaattgatgggttagcgatttcgttacggtacgaagacggcttgcttgtccag
ggctcgacgcggggcaacggggtgatcggtgaggatattacgcagaatcttaaaacgatt
ccctcaattcctcaaaaactcaaccgcccattaaccgtggaagttcgtggtgagtgctac
atgccaaaggactcgtttatgcggttgaacgaacggcgggaagctgagggccagccagtc
tttgcgaaccccagaaatgcagcggctggtagcttgcggcagttggattcacgggtgacc
gctgaccggaaattaagcacgtttatgtataacgtcgccgattttgatcccattgacgcg
cggactcagagtgatatgttgttagaactgacgtcacttgggtttacgaccaatcccaca
aatcgggtggctgagtcacttgatgatgtgtttgcatttatcactgaatacacgggcaaa
cgagatgacctgccgtatggcatcgatggcatcgtgatcaaagtgaactctttgccgcgg
caacgggcgctcggtgcaacggtgaaggatccacggtgggagattgcctacaagttccca
ccagaagaagcacaaaccattgtgcgtgatattgagtggaccgttggccgtaccggggtc
gtcacaccgaccgctgtcatggatccggtccaacttgctggcacaacggtggcaagggcc
tccttgcataatccggattacctggttgaaaaggacatccgtgtcggcgataccgtgctg
ttgcataaagcgggcgatatcattccggaaatttcgaatttcgttgccgctaaacgtgat
cccaacagtgcgccttacgtgattccgacgcactgtccttcctgcggcgctgagctggtt
caccttgatgatgaagttgccttgcgctgcatcaatcccaagtgtccagcccagttggca
gaacagttaaatcactttgcctcacgaaatgcgatgaacattgatggcctgggaccgcga
atcattaaacagctgtttgaaaaggcgtacgtgacggatgttgctgacctttaccgactc
acgtttgaccagctggtcacgcttgataaatttggcgagaagtcggctacaaacctgttg
acggcgatcgataatagtcgggataattcgctggaacggctgttatttggtttgggtatc
cgtcacgttggtgtcaaggcgggccgcttgctggcagctgagtttggcgacattgacgcg
ttaatggctgcggatgaagaatcgattgctgccattgcgtcagtcggtgataccattgct
gatagcgtggtgacctactttgaaaatgcggatgtgcaaacgttgatcgacgagctcaaa
acgcttggggtcaacatgacctataccggtgcaccagctgaaccagccaacgctgatggg
ttcttcaacggtaagcgcgttgttttgacgggcaagctgacgcagatgagccgaccagaa
gcaacagaatggcttgaagcacagggcgccaaggtcactggcagcgtttcgaaaaaaacg
gacctgctgattgctggcgaagatgccggcagcaagctcaccaaggcccagtccttgtcc
gtgccggtttggaacgaggcaagatttgccagtgaaatgagcgctgacacagcaaatgaa
aatggaggaaatcgtgatgaaacgaattaa
DBGET
integrated database retrieval system
