Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12): lp12_0980
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Entry
lp12_0980 CDS
T01726
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpe
Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12)
Pathway
lpe03030
DNA replication
lpe03410
Base excision repair
lpe03420
Nucleotide excision repair
lpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
lp12_0980
03410 Base excision repair
lp12_0980
03420 Nucleotide excision repair
lp12_0980
03430 Mismatch repair
lp12_0980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpe03032
]
lp12_0980
03400 DNA repair and recombination proteins [BR:
lpe03400
]
lp12_0980
Enzymes [BR:
lpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
lp12_0980
DNA replication proteins [BR:
lpe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
lp12_0980
DNA repair and recombination proteins [BR:
lpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
lp12_0980
NER (nucleotide excision repair)
GGR (global genome repair) factors
lp12_0980
MMR (mismatch excision repair)
DNA ligase
lp12_0980
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
lp12_0980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AEW51249
LinkDB
All DBs
Position
1062309..1064360
Genome browser
AA seq
683 aa
AA seq
DB search
MLFLFWESSLMNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQ
YPQFLSPDSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQ
LVFACEPKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKL
IEVRGEVYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGI
GACEDYKLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGV
VYKIDSISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVS
VGGVTVSNATLHNFDEITRKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKN
CPVCGSEVVREADEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGI
VHHLADLYELDLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARV
LAEHYCDVESLKAATIEELMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPE
KIQVNQQNPFFGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAGSK
LIKATELGVAIIEEDEFLKWVNS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
ctgttgtttttattttgggaatcttcattaatgaatgatcaaggaattaaggaatcgata
gaaacgcttaaagagcaaataagaaaatacgattatcactattatgttttagatgaacct
ttggttcccgacgcggaatatgatcgatgtttcaaggcattgcaacagtatgaagagcaa
tatccgcaatttttatcgccagattctcctacacagagagtgagcggtactccttcagat
gcttttatgccggtagcccataagcaacccatgttgtctttgtccaatgtgtttactacc
gatgaattaaaagcattcattaagcgagcaattgagaaactggatgaaccaaatcaacaa
ctggtatttgcttgcgaaccaaagcttgatgggttggctgttaacatgacttatgagggc
gggatcttgactcatgccgcaactcgtggcgatggtgctgtaggagaaaacatcacagca
aatattaagactattgcttcagttccattaaggctaagggttagtaaccctccaaaattg
atcgaagtgcggggtgaagtctatatccccaaagccgattttgaagcttacaacgcaagg
gctagagagctcggtgaaaaaacttttgctaatccgcgaaatgctgctgcaggcagttta
aggcaattaaatcctgaaatttctgccagtcgtccacttgctatttattgttatggtata
ggggcttgtgaggattataagttacctaacagtcatttggagcaattgaatttattaaaa
gagtttggatttagagtgtctccagaaacgaggagggcggttggagtagaaggctgttta
gattattaccagtatatgttagcgaaacggaatcaattgccatttgaaatcgatggggtt
gtttataagattgacagtatctccttgcaacagcaattaggttatgtttctcgtgcccca
agatttgcttgtgcccataaatttcccgctacagaagaaatgactcgtctgatagccgtg
gatttccaggtaggtagaacgggcgctgtgacaccggttgcacgtttggagccagttagt
gttggtggtgttactgtgagtaatgcgactttgcataattttgatgaaattacccgaaaa
gacattcgtattggtgatacagttattattcgccgtgccggtgacgtgatccctgaagtg
gtttctgtgattttggaaaagcgtcccgctaatgccagaatgattgagcttcctaaaaat
tgccctgtttgtggttctgaagtcgtaagggaagccgatgaagcaattgctcgttgtgtc
ggcggtttatattgtaaagcacaattaaaaaggatgatgtggcattttgcttctcgaaaa
gcaatgtatattgaaggacttggcagtgttttaattgaccagttagttgatgagggtatt
gtccatcatttggcggatctttatgaactcgatttgcagactttagctaacctgccaagg
atgggggagaaatctgcaaaaaacctattatccgctttggaaaaaagtaaaaaaacgact
ttcaatcgctttctttatgctttggggatcagagaaatcggtgaagccggcgcaagggtt
ttagcggagcactactgcgatgtagagagcttgaaagcggcaacgattgaggaattaatg
actctgaatgacataggtccagtagcggcttctcatatagtccatttctttgcccaagcg
cataatcttgaagtgattgaccgtcttctcgagttgggtattcattggccaaagcccgaa
aaaatacaggttaatcagcaaaatccattttttggtaaaacagtagttttaactggaact
ctgagtaccatggggagggaagaggcaaaggcaaaattattagccttgggagcaaaagta
agtggaagtgtgtcttccaaaacggattatgtagtagcaggaagtgaagccggttcaaag
ctgattaaagcgacagaactgggagtagcgattatagaggaagacgagtttttaaaatgg
gttaattcatga
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