Lolium perenne (perennial ryegrass): 127305433
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Entry
127305433 CDS
T08650
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127305433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127305433
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127305433
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA
AAA_28
SMC_N
NACHT
AAA_15
AAA_23
AAA_18
SRP54
AAA_30
AAA_25
Rad17
AAA_24
AAA_22
AAA_5
Zeta_toxin
PduV-EutP
AAA_16
AAA_33
Arf
AAA_14
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
127305433
NCBI-ProteinID:
XP_051191810
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Position
6:263544511..263548288
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AA seq
293 aa
AA seq
DB search
MAGGEGDEGWKRSGIEVSTLQFGYDGQAPLFARFNLRVAPGSRCLLVGANGSGKTTLLKI
LAGKHMVGGRDVVRVLNGSAFHDTQFVCSGDLSYLGGSWSRTVGSIGDVPLQGDFSAEHM
IFGVDGVDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVDL
DVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATDIAYIQEGELRKSAKYSDIEEL
KTAKNLLSVVESWLKSETKLPKKEPPRVESQPRRSSPFDASPFRASRHMAYYR
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggccggaggagagggagacgaggggtggaagaggagcgggatcgaggtgagcaccctg
cagttcggctacgacgggcaggcgccgctcttcgcgcgctttaacctccgcgtcgccccc
ggctcgcgctgcctcctcgtcggcgccaatggatccggcaagaccactctcttgaagatc
cttgcagggaaacatatggttggaggacgggatgttgtccgtgttcttaatggttctgct
tttcatgacacacagttcgtgtgcagcggcgatctttcctacctcgggggttcttggagt
cgaacggttggttcaattggtgatgttccactacaaggcgatttctctgctgagcacatg
atttttggagttgatggggttgatcctgttaggcgagagaagctgattgatctattagac
attgatctgcaatggcgcatgcataaagtttcagacggacagcgccgcagggtacagatt
tgcatgggtcttcttcatccatacaaggtactcttgcttgatgaaatcaccgtcgatctt
gatgtcgtgaccaggatggatctccttgacttcttcaaggaagagtgtgaacagagagaa
gctacaatcgtctatgccacccacatattcgacggacttgagacatgggccaccgacatt
gcgtacatccaagaaggagaactcaggaaatccgcgaaatactctgacatcgaggagcta
aagactgccaagaacctgctgtcggtcgtggagtcatggctcaaatctgagaccaagctc
ccaaagaaagaacctccgcgcgttgagagccagcccaggcgctcctccccgttcgacgcc
tcccctttccgagcatcacgccacatggcctactaccggtga
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