Lactococcus petauri: lgb_00008
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Entry
lgb_00008 CDS
T08464
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpet
Lactococcus petauri
Pathway
lpet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lgb_00008 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpet03400
]
lgb_00008 (mfd)
Enzymes [BR:
lpet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lgb_00008 (mfd)
DNA repair and recombination proteins [BR:
lpet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lgb_00008 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
AAA_16
AAA_5
Bac_luciferase
Motif
Other DBs
NCBI-ProteinID:
UQU59263
LinkDB
All DBs
Position
11703..15188
Genome browser
AA seq
1161 aa
AA seq
DB search
MKINEFFDQNHDLQSWQRSFAKAERTLLTGLSGTAQAMVMANAYENNPDKYVIVTDNQYH
ANELYDELTNLVEDEKVYQFFSDDNVYAEFAIASKDRTAYRLEALNFLLNTQQTGFLVVP
FMALRSLLPHPDNFQENYLLLTQGDEFEMTNLLEILASAGYEKTQRVMVPGEFSQRGDIV
DIYPLDAAQPLRLEFFGDEVDTIRAFDSETQRSHENMDQVEIYPASDFILMPWEFEQGVK
KLSTQLQNVTDPTAQSYFEEVIAAAENHYYHKDLRKFAEYFYEKPASLLNYFPKNIQIFI
DDFQKINEANNKTEQELAEFIVSEKSMGRSFEGQTYLLDVISKLRSHKPASFFSNFQKGL
GNIKFDALYNFNQHSMQQFFGQMELFYTEVDRFVKQGFTVVLAVSSEKLRSELQKLDLEL
QMVSIDEIQKGKINLLNLNLNNGFNFIDEKLVVITESEIFGKARKKKTRRLNITNAERLK
DYNELEVGDYVVHKNHGIGKYLGIQTIEVSGMHRDYLTIQYQNGDTISVPVDHLNLLSKY
SAAEGKTPKINKLNDGRWRKTMSSVSKQVEDISEDLIKLYSARQALKGHAFSLDDVNQEE
FDNGFAYPETADQLRSISEIKKDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDSKQV
AVLVPTTVLAEQHYNNFMERFVNFGVNIAVLSRFQTKAQQTAILDKLKKGRVDLIIGTHR
LLSKDVEFLDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRD
LSVIETPPTNRYPVQTYVMETNYGVVRDAVLREISRGGQVYYVHNRVDSIEQKVSQLEEL
IPEARIGYIHGQMTEIQLENTLMDFINNEYDVLVATTIIETGVDIPNANTLFIENADMMG
LSQLYQLRGRVGRSSRVAYAYFMYKPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSI
RGAGNLLGAEQSGFIDSVGFELYSQLLEEAVHKRMGGDKIKTKTNAEIMLGLDAFIPSYY
IGDERQKIEIYKRIRQVDTRKNYEELQDEMMDRFGEYPDEVAYLLEIGLLKTFADNALVE
KIEKNKFEVVLTMAKSANTMYDPQEYFEALSETNLKASVGEKLGKMTFRFKIENRKDVVL
LREIMNFTEKLSELRDKHEKE
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaacgaattttttgatcaaaaccacgatttacaatcatggcagagaagtttt
gcaaaagcagagcgtacgcttttaaccggtctatctggaactgctcaggcgatggttatg
gctaatgcttatgagaataatccggataagtacgtgattgtcactgataatcaataccac
gcaaacgaactttatgatgaactgactaatcttgttgaagatgagaaggtttaccaattt
ttttcagatgacaatgtctatgctgaatttgcaatagcaagtaaagaccggacagcctat
cgtcttgaagctctaaatttcctgcttaatacacagcaaacaggatttttggtcgttcct
tttatggctttacgttcgctcttgcctcaccctgataattttcaagaaaactatctcctc
ctgactcaaggtgatgaatttgagatgacaaatctactcgaaatattagccagtgccggt
tatgagaagacacagcgtgtgatggtacctggagagttttcacaacgtggtgatatcgtg
gatatttatccactcgatgcagctcaacctttaaggctggaattttttggcgacgaagta
gatacgattcgtgcctttgatagtgagacacaacgctcgcacgaaaatatggatcaagta
gaaatatatccggcgagcgattttattttaatgccttgggaatttgagcaaggtgtaaaa
aaattaagtactcagctacaaaatgtaaccgatcctacagctcaatcttattttgaagaa
gtgattgcagcagcggaaaatcactactatcataaagatttacgcaagtttgcagaatat
ttttacgaaaagccagcctctcttttgaattattttccgaaaaatattcaaatctttatt
gatgattttcaaaaaattaacgaagccaataataaaacagaacaagaacttgcagaattt
attgtttcggaaaaaagtatgggacgctcttttgaaggacaaacttatcttttagatgtt
atttctaagttacgttctcacaaaccggcaagttttttctcgaattttcaaaaaggctta
ggtaatataaagtttgatgctttatataattttaatcaacattcgatgcagcagttcttt
gggcaaatggaactcttttacaccgaagttgacaggtttgtaaagcagggttttacagtt
gttttggctgtgtcttctgagaaactacgttcggagctccagaaactagatttagagctt
caaatggtgtccattgatgaaattcaaaaaggaaaaataaaccttttgaatttaaatctt
aacaatggttttaattttattgatgagaaacttgttgttattactgagtcagaaattttt
ggtaaagcaagaaagaaaaaaacacggcgtttaaatatcactaatgcagaacgtctaaaa
gattacaatgaactcgaagttggtgattacgttgtacataaaaatcacgggatagggaaa
tacttaggtattcaaaccattgaagtatcaggaatgcatcgtgattacttgacgattcaa
tatcaaaatggtgatacgatatcggttccagttgaccatctgaatctattaagtaaatac
tctgcggctgagggaaaaactcccaagataaataagcttaatgatggccgttggcgtaaa
acgatgtcatctgtaagtaaacaagtcgaagatatttctgaggacctgatcaagctgtat
tcggccagacaagctttaaaaggtcatgctttttctttggatgatgttaaccaggaagaa
tttgacaatggatttgcttacccagaaactgcagaccagttgcgctcaattagtgaaatc
aaaaaggatatggaacttgagcgcccgatggatcgactattagtgggagatgttggcttt
gggaaaacagaggttgcaatgcgtgcagcctttaaagcaattaatgacagtaaacaggtc
gccgttttagtaccaaccactgttttagcagaacaacactataataactttatggaacgc
tttgtaaactttggtgtaaacattgctgttttgagtcgtttccaaaccaaggctcaacaa
acggcgattttggataagttaaagaaaggacgcgtggacttaatcattggtacccatcgt
cttttatccaaggatgtcgaatttcttgacttgggcttaatgattattgatgaggaacag
cgcttcggtgtcaaacacaaggaacgtttgaaagaattaaaaacacaggttgatgttttg
acacttaccgcaacacctataccgagaaccttgcatatgtcaatgttaggtattcgtgat
ttatcagtcattgaaacgccaccaacaaaccgttatcctgtccaaacatatgtaatggaa
acaaattatggagttgtacgtgatgcggtacttcgggagatttcgcgtggtgggcaggtt
tactacgttcataaccgagtagacagtattgagcaaaaagtttcccaactggaagagttg
atacctgaggcaagaattggctatattcatggacagatgacagaaattcaattagaaaat
accttgatggattttataaataatgaatatgatgtcttagtggcaacgacgattattgaa
acaggggttgatattccaaatgccaatacgctctttattgaaaatgccgatatgatggga
ttatcgcaactgtatcaattaagggggcgcgtgggccgaagcagtcgagttgcttatgct
tactttatgtataaaccagaaaaaatcttatctgaagtttcagaaaagcgtttagaagca
atcaagggctttacagaacttggctcaggtttcaaaattgcaatgcgtgatctttcaatt
cgaggcgcaggaaatttgctgggagcagaacaatctggctttattgattcggttggtttt
gaactttactcgcaattgcttgaagaagcagtccataaacgcatgggtggcgataagatt
aagacgaagaccaatgcggaaattatgcttggcttagatgcttttattccaagttattat
atcggtgatgaaagacaaaaaattgagatttataagcgtattcgccaagtggatactcga
aaaaactatgaagaactacaagatgagatgatggaccgttttggagagtatccggatgag
gttgcctacttgttagaaattgggttattgaaaacatttgcggataatgctctcgttgaa
aaaatcgaaaaaaataaatttgaagttgtgctaacaatggctaaatcagccaatacgatg
tacgatccacaagagtattttgaagctttgtctgaaacaaacttaaaagcaagtgtgggt
gagaagctaggaaaaatgacttttcgttttaaaattgaaaatcgaaaagatgtcgtcctt
ctacgtgaaatcatgaattttactgaaaaactttcagaattaagagataagcacgaaaaa
gaataa
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