Lactococcus petauri: lgb_00398
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Entry
lgb_00398 CDS
T08464
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lpet
Lactococcus petauri
Pathway
lpet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
lgb_00398 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpet03021
]
lgb_00398 (rpoB)
03400 DNA repair and recombination proteins [BR:
lpet03400
]
lgb_00398 (rpoB)
Enzymes [BR:
lpet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
lgb_00398 (rpoB)
Transcription machinery [BR:
lpet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
lgb_00398 (rpoB)
DNA repair and recombination proteins [BR:
lpet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
lgb_00398 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
UQU59640
LinkDB
All DBs
Position
409798..413388
Genome browser
AA seq
1196 aa
AA seq
DB search
MAGHDVKYGKHRTRRSFSRIKEVIGLPNLIEVQTASYQNFLDEGLANVFKEMFPIDNFAG
TMELEFVGYEMKAPKYTVDEARAHDANYSAPIHVTFRLVNKETGELKTQEVFFGDFPLMT
EMGTFINNGSERLIVSQLVRSPGSYFHLKTDKNGLESYGHTTIPNRGAWFELDTDAKGVG
YVRIDRTRKLTFTTMLRALGFGSDDEILELMGPSELLNTTLGKDVHKNPSDTRVEEALKD
IYDRLRPGEPKTADSSRGLLIARFFDPRRYDFAPVGRYKFNKKLALKNRILGLTLAEPIV
DPETGEILVESDTLVTRDVLDSIENLLDNGLNTTVYQPSDDAVIPEPIELQTLKVYSPKD
PERVVTLISNGQIPAENRVLMPADVIANINYWLGLSEGIGKVDDIDHLGNRRIRSVGELL
QNQVRIGLSRMERVIRERMSSSENENMTPQGLINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRFSALGPGGISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAK
INEYGFIMSPYRRIDRATGTVTDEVEYLTADEEDNYTVAQANSPLTDDNKFVNETVMARH
VGNNIEVDASTADYMDVSPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
WIGTGMEHQTARDSGAAVIAKHDGTVEYVDADEIRVRRTSGELDIYNIMKYRRSNSGTSY
NQRPLAELGDKVEAGDIIGDGPSMENGEMALGQNPLVAYMTWEGYNFEDAIIMSERLIKD
DVYTSIAIEEYESETRDTKLGPEEITREIPNIGDEALKNLDEDGIIRIGAEVEDGDLLVG
KVTPKGETDPTPEERLLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSG
VNKLVRVFISQKRKIHVGDKMAGRHGNKGVVSNIVPVEDMPYLPDGTPIDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIASPVFDGASDEDIWDTVKEAGMADDAKTVLYDGRTGE
AFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKPGLPESFRVLVKELQALGMDLKV
LDGEKNVLDLRELDDEIEVRQENIDITPEMLEAQEQIVTEAVETEQALISEAKEEK
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgtaaaatacggtaaacaccgtacaagacgcagtttttcacgaatc
aaagaagtaattggtttgccgaacttgatcgaagttcaaacagcaagttatcaaaacttc
cttgacgaaggtttggctaacgtcttcaaagaaatgtttccaattgacaactttgcgggc
acaatggagcttgaatttgttggatatgaaatgaaagcccctaaatacactgtggatgaa
gcccgtgctcacgatgcaaactattctgcaccgattcatgtgactttccgccttgtaaat
aaagaaacaggcgaattgaaaacacaagaagttttcttcggtgatttcccacttatgact
gaaatgggtacattcatcaacaacggttctgaacgtttgatcgtcagccagttggtacgt
agcccgggttcatacttccaccttaaaacagataaaaatggtttggaatcttatggtcat
acaactattcctaaccgtggtgcgtggtttgaattagatacagacgctaaaggtgttggt
tatgtacgtattgaccgtacacgtaagttaacatttacaacaatgttgcgtgctcttggt
tttggtagtgacgatgaaatccttgaacttatgggaccaagtgaactcctcaatacaaca
ttgggcaaagacgttcacaaaaacccatcagacacacgtgttgaagaagcacttaaagac
atctatgaccgcctccgtcctggtgaacctaaaacagcggacagctctcgtggactttta
attgcacgtttcttcgacccacgtcgttacgactttgcacctgtaggtcgttataaattt
aataaaaagcttgcgcttaaaaaccgtattctcggtttgactttggcagagccaatcgtt
gatcctgaaacaggtgaaattctcgttgaatctgatactcttgtaacacgtgatgtttta
gattctatcgaaaaccttttggataatggtctcaatacaacagtttatcaaccatctgac
gatgctgttattcctgagccaattgaacttcaaacattgaaagtttactctccaaaagat
ccagaacgtgtcgtgacattgatttctaatggtcaaattcctgcagaaaatcgtgtgttg
atgccagctgatgtgattgctaacatcaactactggttaggtctttctgaaggtattggt
aaagtagacgatattgaccacttaggaaaccgtcgtatccgttcagttggtgaattgctt
caaaaccaagtccgtatcggtctttcacgtatggaacgtgttatccgtgaacgtatgtca
tcttctgaaaatgaaaatatgacacctcaaggattgattaacatccgtcctgtaactgct
gcaatcaaagaattctttggttcttcacagttgtcacaatttatggaccaacacaatcct
ttgtcagagctttcacacaaacgtcgtttctctgccttaggtcctggtggtatctcacgt
gaccgtgcttcatatgaagtacgtgacgttcactacactcactatggccgtatgtgtccg
attgaaacacctgagggtccaaatatcgggttgatcaataacttgtcttcttatgccaaa
atcaatgaatatggtttcatcatgtcaccataccgtcgtattgatcgtgcaacgggaaca
gttacggatgaagtagagtatttaacagctgacgaagaggacaactacactgttgcccaa
gctaactcaccattgactgatgacaacaaatttgtcaacgaaacagtaatggcccgtcac
gttggtaacaatattgaagttgatgcttcaactgcagactatatggacgtttctcctaaa
caggttatcgccgtagcagctgcttgtattcctttcttggaaaacgatgactccaaccgt
gcccttatgggtgccaacatgcaacgtcaagccgttccattgattgatccacatgcacct
tggattggtacaggtatggaacatcaaacagcacgtgattcaggtgctgctgtgatcgct
aaacatgatggtaccgttgaatatgtagatgctgacgaaatccgtgtacgtcgaacatca
ggtgaacttgatatctataacattatgaagtaccgtcgttcaaactcaggaacttcatat
aaccaacgtccacttgctgaacttggtgataaagttgaagccggcgacatcattggtgat
ggaccatcaatggaaaatggggaaatggcgcttggccaaaacccactcgttgcttatatg
acttgggaaggttataacttcgaggatgccattatcatgtctgaacgtttgattaaagat
gacgtttatacatctattgctatcgaagagtatgaatcagaaacacgcgatacaaagctt
ggccctgaagaaattacacgcgaaattccaaatattggtgatgaagccctcaaaaacttg
gacgaagacggtattatccgtattggtgctgaggttgaagatggggacttgctcgttggt
aaagtaacaccaaaaggtgaaactgatcctacacctgaagaacgtcttcttcgtgctatc
tttggtgaaaaagcacgtgaagttcgtgatacatcactccgtgttcctcacggtggtggc
ggtatcgttcacgatgtacgtgtattcacacgtgaaaatggtgatgaattgccatcaggt
gtgaacaagttggttcgtgtcttcatctcacaaaaacgtaaaatccacgttggggataag
atggccggacgtcacggtaacaaaggtgtcgtttcaaatatcgttcctgtagaggatatg
ccttacttgccggatggtacaccaatcgatatcatgttgaatccattgggtgtcccttct
cgtatgaatatcggacaagttatggaacttcacttaggtatggctgcacgtacattgggt
attcacattgcatcaccggtcttcgatggtgcaagtgatgaagatatctgggataccgtt
aaggaagctggaatggctgatgatgccaaaacagtactttatgatggacgtacaggtgaa
gcttttgataaccgtatttctgtcggtgtcatgtatatgatcaaacttcaccacatggtt
gatgataaacttcacgcacgtagtgttggtccttactcactcgttacacaacaaccgctc
ggtggtaaagcgcagttcggtggacaacgtttcggggaaatggaagtttgggcccttgaa
gcttatggtgcggcaaatgttctccaagaaattttgacttacaagtcagatgatgttatt
ggacgtacacgtgcttatgaagctatcgttaagggtgaacgtattcctaaaccaggtctt
cctgaatcattccgtgtccttgtaaaagaattgcaagcacttggtatggatcttaaagtc
cttgatggtgagaaaaatgtccttgatcttcgtgaacttgatgatgaaatcgaagttcgt
caagaaaatattgacattacgccagaaatgcttgaagctcaggagcaaattgttactgaa
gcagtggaaactgaacaagcattgattagcgaagcaaaagaagaaaaataa
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