Lactococcus petauri: lgb_00399
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Entry
lgb_00399 CDS
T08464
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpet
Lactococcus petauri
Pathway
lpet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
lgb_00399 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpet03021
]
lgb_00399 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpet03400
]
lgb_00399 (rpoC)
Enzymes [BR:
lpet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
lgb_00399 (rpoC)
Transcription machinery [BR:
lpet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
lgb_00399 (rpoC)
DNA repair and recombination proteins [BR:
lpet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
lgb_00399 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UQU59641
LinkDB
All DBs
Position
413708..417355
Genome browser
AA seq
1215 aa
AA seq
DB search
MVDVNKFESMRIGIASPQKIRYWSFGEVKKPETINYRTQKPEREGLFDERIFGPQKDWEC
ACGKLKGVFYKNQVCELCGVQVTTAKSRRERMGHIELAAPTSHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVIDPKETDLEKKQLLTEREYREQLLKNGFGSFVAKMGAEAIQDLL
NDVDIDAEVAELKEELKNVSGQRRVKIIRRLDVLTAFKKSGNKLAWMVLNVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPNIIVQNEKRMLQEAVDTLIDNG
RRGRPITGAGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMSELVKREMAANIRAAKRKVERQDAEVWDVLEEVVKEHPVLLNRAPTLH
RLGIQAFEPVLIDGRAMRLHPLACEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEAKGREGEGMIFSNPEEVEIAMRNGYVHLHTRIGI
ATQSMNKPWTEFQKGKILITTVGKVMFNSIMPEGNEIYPEGMPYLNENTDENITTQTDDR
FFMEPGEDIHKRLAEIDTVLPFKKKHLGNIIAEVFKRYRTTTTSEFLDLLKNLGYHQSTL
AGLTVGIADIPVVPEKAEIIGAAHKRVEQITKQFRRGLITDDERYNAVTDVWRGAKDTLE
KRLIEEQDLTNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPIISNFREGLSV
LEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREVDCGTDRGLLISDIATGK
EMVEPLVERLEGRYTRKTVVHPETGEVIIGDDQLITEDIAKQIVAAGIKEVTIRSVFTCK
TPHGVCKHCYGKNLATGEAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSSDITQG
LPRVQEIFEARNPKGEAIITEVTGTVESIVEDAATRTREITVKGKTDTRSYTVSMADVLM
VEEGEFIHRGHQLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGDKHIEVMV
RQMLRKVRVMDTGDVDILPGGLMDISDFEKINEEALLSGKTPATARPVLMGITKASLETN
SFLSAASFQETTRVLTDAAIHGKEDHLLGLKENVIIGKIIPAGTGMFRYRNLEPLSDLSN
APEVTVSETEIEEVK
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgtaaataaatttgagagtatgcgaattggtatcgcatctccacaaaaaatt
cgttactggtcatttggtgaagtcaaaaaaccagaaaccatcaactatcgtacgcaaaaa
cctgaacgcgaaggtctcttcgatgagcgtatctttggtccacaaaaggactgggaatgt
gcttgtggtaagcttaaaggcgttttctacaaaaaccaagtctgcgaactctgtggtgtt
caagtaacgacagctaaatcacgtcgtgaacgtatggggcacatcgagttggcagcacca
acttcacacatctggtatttcaaagggattccatcacgtatggggcttgcacttgatatg
agcccacgtgctcttgaagaagttatttacttcgcaagttatgtcgttattgatcctaag
gaaacagatcttgaaaagaaacaacttttgacagagcgtgaatatcgtgaacaacttttg
aaaaatggttttggttcatttgttgcgaaaatgggtgctgaagctatccaagatttgctt
aacgatgttgatattgatgcagaagttgctgaacttaaagaagaattgaaaaatgttagc
ggacaacgtcgtgtgaaaatcattcgtcgtttagacgtattaacagccttcaaaaaatct
ggtaacaaattagcttggatggtgcttaatgtgcttccagttattccaccagatcttcgt
ccaatggttcaattagatggtggacgttttgccacatctgatttgaatgacctttatcgt
cgtgttatcaaccgtaataatcgtttgaaacgtttgatggagcttaacgcccctaatatt
atcgtccaaaatgaaaaacgtatgttgcaagaagctgttgatacattgattgacaacggt
cgtcgtggtcgtccaatcacaggtgccggtaatcgtccgcttaaatctcttagccatatg
ctgaaaggtaaacaagggcgtttccgtcaaaacttgttgggtaaacgtgttgactactca
ggtcgttcagttattgcagttggtccaacacttaaaatgtaccaatgtggtgtcccacgt
gaaatggctatcgaactcttcaaaccattcgtaatgtccgaattggttaaacgtgaaatg
gctgctaacatccgtgcggctaaacgtaaagttgaacgtcaagatgctgaagtttgggat
gtccttgaagaagttgttaaagaacaccctgtccttcttaaccgcgcacctacgcttcac
cgcttaggtattcaagcgttcgagccagtacttattgatggacgtgcaatgcgtttgcac
ccattggcttgtgaagcctacaatgccgactttgacggtgaccaaatggcgattcacgtg
ccattgtcagaagaagcgcaagccgaagcacgtttgcttatgcttgctgctgaacacatc
cttaaccctaaagatggtaaaccagtcgttacaccttctcaagatatggtcttgggtaac
tactacttgacaatggaagcaaaaggacgtgaaggagaaggtatgatcttctctaatcct
gaagaagttgaaattgcaatgcgtaacggatatgtccacttgcatacacgtatcggtatt
gcaacacaatcaatgaataaaccttggacagaattccaaaaaggtaaaatcttgattaca
actgtcggtaaagtaatgttcaactcaatcatgcctgaaggaaatgaaatttatccagaa
ggtatgccttacttgaatgaaaataccgatgagaacatcacaactcaaacagatgatcgt
ttcttcatggaacctggtgaagatatccataaacgtttagctgaaattgatacagtattg
ccattcaagaaaaaacacttgggtaatattatcgctgaagtcttcaaacgttaccgtaca
acaacaacttctgagttccttgacttgctcaagaacttaggttaccatcaatcaacattg
gctggtttaacagttggtattgcggatatcccagtggttcctgaaaaagcagaaatcatt
ggtgcagcacacaaacgtgtagaacaaattactaaacaattccgtcgtggtttgattact
gatgatgagcgctacaatgcggttactgatgtttggcgtggtgcaaaagatacacttgaa
aaacgcttgattgaagaacaagatttgactaacccaatcgttatgatgatggactctggt
gcccgtggtaacatttccaacttctcgcaattggccggtatgcgtggtttgatggctgct
cctaatggtcgtatcatggaattgcctatcatttctaacttccgtgaaggtctttctgtc
ttggaaatgttcttctcaactcacggtgcgcgtaaaggtatgaccgatacagcccttaag
actgccgattctggttaccttacacgtcgtttggttgacgtcgctcaagatgttatcatc
cgtgaagtggattgtggtacagaccgtggactcttgatttctgatattgccactggtaaa
gaaatggtagaaccgttggttgaacgtctcgaaggacgttacacacgtaaaacagttgta
catccagaaactggtgaagtaattattggcgatgatcaattgattacagaagatatcgcg
aagcaaatcgttgctgcaggtatcaaagaagttacaatccgttcagtatttacatgtaaa
acaccacatggtgtatgtaaacactgttacggtaaaaacttggcaacaggtgaagccgtt
gaagttggtgaagctgttggtacaatcgccgctcaatcaatcggtgaaccaggtacacag
ttgacaatgcgtacattccacacgggtggtgttgcatcaagctcagatatcactcaaggt
ttgcctcgtgtacaagaaatctttgaagcacgtaaccctaaaggggaagcaatcattact
gaagttactggtacggttgaatctatcgttgaagatgctgcgacacgtacacgtgaaatc
acagtcaaaggcaaaacagatacacgttcatatacagtatcaatggctgatgtacttatg
gttgaagaaggtgaatttatccaccgtggtcaccaattgatccaaggttcaattgaacct
aagcacttgctccaagtacgtgatgctttatctgttgaaacttacttgctcggtgaagtt
caaaaaacttaccgttcacaaggggttgaaatcggggataaacacatcgaggttatggtt
cgccaaatgcttcgtaaagtccgcgtaatggatactggtgatgtggatatcttgcctggt
ggacttatggatatttctgactttgaaaaaatcaatgaagaagctctcctttctggtaaa
acaccagcgacagcacgacctgttcttatgggtattaccaaagcatcattggaaacaaat
tcattcttgtctgctgcatccttccaagaaacaacacgtgtcttgaccgatgctgcaatc
catggtaaagaagaccacttacttggtcttaaggaaaatgtcattatcggtaagattatt
cctgccggtacaggtatgttccgttaccgtaatcttgagccattgtcagatttgtcaaat
gctcctgaggtcactgtttcagaaactgaaattgaagaagtaaaataa
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