Lactococcus petauri: lgb_01350
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Entry
lgb_01350 CDS
T08464
Symbol
rnj2
Name
(GenBank) Ribonuclease J 2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpet
Lactococcus petauri
Pathway
lpet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lgb_01350 (rnj2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpet03019
]
lgb_01350 (rnj2)
Messenger RNA biogenesis [BR:
lpet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lgb_01350 (rnj2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
P8
BHD_3
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UQU60585
LinkDB
All DBs
Position
complement(1396569..1398305)
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AA seq
578 aa
AA seq
DB search
MADIKITPLGGVREFGKNMYLAEVNEQIFVLDAGLKYADSDMLGIDFVIPDIDYLVENAD
RVAGIFLTHGHADSIGALPYIVSELRVPVFGSELTIELAKINVRNYDGSKKFKDFHVVNE
ETEIDFGQAVISFFSTTHTIPESMGIVIGTDSGNIVYTGDFRFDPAVAPGYRTNMRRLAE
IGSSKVLALLSSSPNALSTAQSASEHEIYEKIFDTIDEAQGRVIIACNAGNLGRIQQVVD
AAIKLGRHIVFTGQDMDQIVETATRLKKLQIEDKKAIIKPNEISKYADDELVIIETGRMG
EPLKVLGDMAHKRHKWVKIKEGDVAFAVTTPSVAYETLVARIENDVYRAGGVMKMLGGDL
KVSGHANARDLQFMIDILRPKNLIPIQGEYRELRAHAELAMEMGMLPEHIFIAKKGESVS
FNKKDEMIPAGVVPAENVMIDGSGIGDIGSVVLRDRKVLSEDGIFIAVITISKSDRKIIS
QTRVHTRGFVYVKTSRDLMKDAGNLVNETVEKYLAGTTFDWSELKGAIRDALGKFLYNQT
RRKPVVLPVVMEARAPQELTRRYKSNKKKANKPTEKSE
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcagatataaaaattacacccttaggcggtgtacgcgaatttggtaaaaatatgtac
ttagcagaggtgaacgaacaaatattcgttctcgatgctggtctaaaatatgcggacagt
gacatgttaggaattgactttgttattccagacattgactatttagttgaaaatgctgat
cgtgttgcagggattttcttgacgcatggtcatgccgattcgattggcgcattaccttat
atcgtttctgaattacgtgttcctgtatttgggagtgagttgacgattgaacttgcgaag
attaatgtgcgcaattatgatggcagcaagaagtttaaggatttccacgtggtcaacgaa
gaaacagaaattgattttggtcaagctgtaatttccttcttttcaacaacacatacaatt
ccagaatcaatggggattgtcattggaactgactccggaaatattgtttatacaggagat
ttccgttttgatccagcagttgcgcctggctatcgtacaaacatgcgacgccttgctgaa
attggaagcagtaaagtccttgctttactttcaagctcaccaaatgctttgtcaacggct
caatctgcaagtgaacatgaaatctacgaaaaaatatttgacacaattgatgaagcacaa
ggtcgtgtgatcattgcttgtaacgcagggaatctcgggcgcatccaacaagtcgttgat
gcagcaatcaagctcggacgccatatcgtctttactggtcaagatatggaccaaatcgtc
gaaacagcaacacgtttgaagaagttgcaaattgaagataaaaaagcaatcattaaacca
aatgaaatcagtaaatatgctgatgatgagcttgttatcattgaaacaggacgtatgggt
gaacccttaaaagttctcggtgacatggcgcacaaacgtcacaaatgggtgaaaatcaaa
gaaggcgatgtggcgtttgctgtaacaactccttcagtagcttatgaaacattagtggca
cgcattgaaaatgacgtttatcgtgcaggtggtgtgatgaagatgttgggtggagattta
aaagtttcaggtcatgccaatgcgcgtgatttgcaatttatgattgatatcttacgacct
aaaaatcttatccctattcaaggtgaataccgtgagttacgtgcacatgctgaattagcc
atggaaatgggcatgcttccagagcacatctttatcgcgaaaaaaggggaatctgtttca
ttcaacaaaaaagacgaaatgattcctgcaggtgttgtaccagcagaaaacgtaatgatt
gatggttcaggtattggggacattggttctgtcgttttacgagaccgtaaagttttgtca
gaagacggtattttcattgctgttatcactatcagtaagagcgaccgtaaaattatcagt
caaacacgtgtacatacgcgtggctttgtctatgtcaaaacatcacgtgatttgatgaaa
gatgcaggaaatttggttaatgaaaccgttgaaaaatatcttgcaggaacaactttcgat
tggtcagaacttaagggcgctattcgtgatgctcttggtaaattcctctacaaccaaaca
cgtcgtaaaccagttgttcttcctgtcgtgatggaagcgcgtgccccacaagaattaaca
cgtcgttacaagagcaacaaaaagaaagcaaataaacccactgaaaagtctgaataa
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