Lactiplantibacillus pentosus: BB562_11645
Help
Entry
BB562_11645 CDS
T05251
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpg
Lactiplantibacillus pentosus
Pathway
lpg03030
DNA replication
lpg03410
Base excision repair
lpg03420
Nucleotide excision repair
lpg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB562_11645 (ligA)
03410 Base excision repair
BB562_11645 (ligA)
03420 Nucleotide excision repair
BB562_11645 (ligA)
03430 Mismatch repair
BB562_11645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpg03032
]
BB562_11645 (ligA)
03400 DNA repair and recombination proteins [BR:
lpg03400
]
BB562_11645 (ligA)
Enzymes [BR:
lpg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BB562_11645 (ligA)
DNA replication proteins [BR:
lpg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BB562_11645 (ligA)
DNA repair and recombination proteins [BR:
lpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BB562_11645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BB562_11645 (ligA)
MMR (mismatch excision repair)
DNA ligase
BB562_11645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BB562_11645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Zn_ribbon_NUD
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AUI79283
UniProt:
A0AAW8VXG4
LinkDB
All DBs
Position
complement(2543932..2545971)
Genome browser
AA seq
679 aa
AA seq
DB search
MADEPNTMTVTQAAEEAATLRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQQFPQ
LVTPDSPTQLVGGTVKSGFDKVTHEIPMLSLGDVFSQAELQEFADRLEQNVGHAVDYNCE
LKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLTKPLTIDVRGECYM
PKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPLTAR
TQSDMLTEFADLGFAINPDFKVAHSMSEVFDYIDQYQNERPELAYGIDGIVIKANPLPLQ
RSLGATVKVPRWAIAYKFPPDEQPTTLLDVEWTVGRTGVVTPTAVMEPVQLAGTTVARAS
LHNPDYVAAKDVRIGDTVLLHKAGDIIPEISSVDLKQRPKDAQPLEIPTDCPSCGAPLVH
LEDEVALRCINPKCPAQVQEGLVHFASRNAMNIDGLGPRIIAQLYTNHLVADVADLYRLT
KDQLLTLDKIKDKSAEKLLTAIDRSRDNSLERLLFGLGIRHVGAKVARLIAQHFGTIEAL
MAASQGEIAAIDSMGDVIANAVVQYFESDEVHTLISELQAVKVNTTYQGPSATVAEDSNS
WFAGKRVVLTGKLESFTRPEATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLD
ITVWDEARFSETMREDTQA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgaacccaacacaatgaccgtcacacaggcggctgaagaggcggcgacttta
cggcaaacgttaaatgaatggcggcggcagtactatgatgaagacgcaccgaatgttgaa
gatagtgtttatgaccaaaagtatgaacgcttagtcgaacttgaacaacaatttccgcaa
ttggtcacgcccgattcgccaacgcaattagttggtgggacggtcaaatctggttttgac
aaagtcactcatgagattccaatgttgtcattaggcgacgtcttctcacaagccgaattg
caggaattcgcggaccggttggaacaaaatgtcggtcatgcggtggattataactgtgag
ttgaaaatcgatgggcttgcgctttccttgcgttatgaagacggggtgctcgttcaaggg
tctactcgtggtaatgggacggtcggtgaagacatcacggccaatatcaagacgatcaag
tcgatcccacaacggttgaccaagccattgacgattgacgttcggggcgaatgttatatg
ccgaaagcggcgtttgcagcgttgaacgaacggcgagaagcagccggtgagccggtcttc
gctaatccgcggaatgcggcagctgggacgttgcggcagttagattcacgcgtggttgcc
gaacgtcagctgagtacctttatgtacaacattgccgactacgaaccgctcacagcccgg
acgcagagcgacatgttgacggagtttgctgacttggggtttgcgattaatcctgacttt
aaggtcgcccattcgatgagcgaagtctttgactatatcgatcagtatcaaaatgaacga
ccagagttggcgtatggtattgatgggatcgtcatcaaagccaatccgttaccactacaa
cggtcattaggtgccacggtcaaagtaccacggtgggcgattgcgtacaagttcccgccc
gatgaacaaccaacgaccttgttagatgttgaatggacggttggtcggacgggcgtcgtc
acgccaactgcagtgatggaacccgttcaattggcggggacgacggtggcccgggcctct
ttgcacaatccggattacgttgcggctaaggacgtccgcatcggcgacaccgtcttgttg
cacaaggctggcgatatcattcctgaaatttcatcggtcgatttaaaacaacggccaaaa
gacgcgcagccgctcgagattccaacggattgtccatcatgtggcgcgccacttgttcat
ttggaagatgaagtggcgttacggtgcattaatccaaagtgtccggcgcaagtccaagaa
gggctcgtccattttgcctcccgtaatgcgatgaacatcgatggcttagggccacggatt
attgcccaattgtataccaatcatctggtggcggatgtcgctgatttatatcgattgacg
aaggaccaactgttaactttagataaaataaaagataaatctgctgaaaagctcttgaca
gcaattgaccgtagccgtgataattcacttgaacggttattgttcggccttggtattcgg
cacgttggcgcgaaggtggctcgcctgattgcgcaacatttcggcaccattgaagcgttg
atggcggcgagtcagggagaaattgcggccattgattcgatgggtgacgtgattgcaaac
gccgtcgttcaatattttgagagtgacgaagtgcatacgttgatcagcgaattacaagcc
gttaaggtgaataccacctatcaaggccctagtgccaccgtggcagaagatagtaatagc
tggtttgcaggtaaacgggtcgttttaacgggtaagctggaaagcttcacccgtcctgaa
gcgacgcaatggctgcaagcccatggtgccacggtaacggggagcgtctcgaaaaagacc
gacctcgtcattgcaggtagcgatgccggaagtaagttgcaaaaagcacagcagctggac
attaccgtatgggatgaagcccggttcagcgaaacaatgagggaggatacacaagcgtga
DBGET
integrated database retrieval system
