Lytechinus pictus (painted urchin): 129260363
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Entry
129260363 CDS
T09066
Name
(RefSeq) ATP-dependent RNA helicase DHX58-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lpic04054
]
129260363
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129260363
Pattern recognition receptors [BR:
lpic04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
129260363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
ResIII
RIG-I_C
DEAD
Helicase_C
CARD_2
SWI2_SNF2
CARD
AAA_11
Motif
Other DBs
NCBI-GeneID:
129260363
NCBI-ProteinID:
XP_054754331
LinkDB
All DBs
Position
1:31865934..31883496
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AA seq
980 aa
AA seq
DB search
MAAASVDAPGQVQDELEDNKIKLITEVYRPILIENLDVSDIAEHLKVQFVGRDDGDGSHE
MFNDVLELIDTSKATRKEITNKFLDALDAKKDKRGLYRAVVHALYQSDNDAIAAHLEGTR
QLDTKKRGQYRSFLWLYANRLEDIEPLCLIVDLKEYLTKRDSEKIRKTVCNQGNCAGASE
LLLRLDRKSEDCFKEFIQALKNHGVHKLAKEMEEMKKFALGISADDDDNDADNGLDGEDI
QVVGNTENTREEELKQISLSLYDYQEEVLTPALQRKNAMVVLPTGTGKTEVAIALIDRLF
LNRGPQKTVFVVNKVPLVKQQKDRCLKYLEGKCMVAGASGEELNHMPLDIVIKNNDIVVL
TAQVLVNALKDENIQLTLSDIALLILDECHHCQKSNPYNVLMALYRDLKLNYPRRPRPQI
LGLTASPGVGNSKDIAQAVEYITKLCANLDCRISRPINYTRKLGNKKNSPEEIQKIVKGR
SLEDGYFREISVIMERIEDRIKHVEAGRTLVEENDEFTKMASRRGTQGYEQNVVNLRKKI
QQEVEDEDDRRELMTCVNYLRQYNNSLFVNRDARTSDAIAYMEAYISEEEISNPSGPVDM
ILKKMFRDKLDNLNRIANLHVNSVNPVLNELGNQLKKEYKKNAESLSIIFTRTRESAKAL
VKWLNEDPELGHLNADLLIGSGNQGMTSTEQNRNLQLFKDKKYKIMVATSVAEEGLDITD
CNMVFRYNYVTSDIGHVQTKGRSRAKYNGKIVVIVNSDLQLQDRELKNIIRVKMSEQAIK
NVADAALNDTKAFEDKIALVQKKDQKERQREKELARANKAKKVERTGIVLHCIKCFQEAC
SLDDIRCIRNQHHVVMNDLFRGKIQLVDLKKQPLIDEFKHQQKIHCGNCQHKWGTMVVYQ
QEELPLIAVKNFTLKDGNGRKLFPKSWKEVPFVVHAIDINDLGKQNNEGAVADPEVAQEN
GEIEEDDGPIEFSNIMQVDD
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcctctgtggatgcaccgggacaggtacaggacgagcttgaggataataag
atcaagctcataacagaagtctacagacctatacttatagagaatctcgatgtgagtgat
attgcagaacatctgaaggttcagtttgttgggagagatgacggggacggcagtcatgag
atgttcaacgacgttcttgagttgatcgacacatcaaaggcgacacgtaaagaaataaca
aacaaattcctagatgcactcgatgctaagaaagacaaaagagggctctatcgcgctgtt
gtccatgctctctaccaatcagataacgatgcaatagcagcccacttggagggaacacgg
caactcgacacaaagaaaaggggacagtatcgctcttttctttggctctacgctaatcga
ttggaggacatcgaacctctctgcctcattgtcgatctgaaggaatatctaacgaagcga
gatagtgaaaaaatacgaaagacggtgtgtaatcaaggtaactgtgcaggcgcctcagaa
cttctcttgagactggaccgtaaatcagaggactgcttcaaagaattcatccaggccctt
aaaaatcatggcgtacacaagcttgcaaaggagatggaggaaatgaagaagttcgcctta
ggaatcagcgcagatgatgatgataatgatgctgacaatggactcgatggcgaggatatt
caagtagtcggcaacacagagaacacgagagaggaggagttaaaacaaattagtctcagt
ctctatgactaccaagaagaggtcctcacaccagccctgcagagaaagaacgccatggtt
gtcctaccgacggggacaggaaagacggaagtcgccatcgctctaatagatcggttgttc
ctaaacaggggcccacagaagactgtgttcgtagtgaacaaagttcctttagtgaagcaa
cagaaggacagatgtctgaaatacttggaaggaaaatgcatggtcgctggggcaagcggc
gaggagttaaaccatatgccattagacatcgtcataaaaaacaacgacatcgtcgtccta
acggcacaggtgctcgtcaacgccctaaaagacgagaacattcagcttacactctccgac
atcgcactccttattcttgatgaatgtcatcactgccagaaatccaatccttataatgtt
ctgatggcgttgtacagagatcttaaactcaattatcctagaaggccaagaccacagatt
cttggcctgacagcgtcccctggggtaggtaattcgaaggatatcgcccaagctgtggaa
tacatcactaagctatgtgctaacctagactgtagaatatcaagaccaatcaattacact
cgtaagctcggtaacaagaaaaactcgcccgaggagatccagaaaatagtgaaaggaaga
tcactagaagatggctactttcgtgagatcagtgtcataatggaacgcatagaagataga
atcaaacatgtggaagccgggaggacactggtagaggaaaatgatgaattcactaagatg
gcatcccgccggggtacacaaggatatgaacagaatgttgtcaatttgaggaagaaaatt
caacaggaggtggaggacgaggatgacaggagagagctaatgacttgtgttaattatttg
aggcaatacaacaatagcttattcgtgaaccgcgatgcgaggacgtccgatgctatcgcc
tacatggaagcgtatatcagcgaggaggagataagtaacccttctggtccggtcgatatg
atactcaagaagatgttcagagataagcttgacaatttgaacagaattgccaatctgcat
gtcaatagtgtcaatcctgtattgaatgagcttgggaatcagttaaagaaggagtataag
aagaatgcagagtcccttagcatcatctttacaaggacaagagaatcagccaaggctttg
gtcaagtggctgaatgaagaccctgagcttgggcatctgaatgctgacttactgattggg
agcggcaatcaaggtatgacgtcaacagaacagaacaggaatctgcagttgttcaaggat
aagaaatacaagatcatggttgccacgtcggtcgcagaagaaggtctggacatcacagac
tgtaacatggttttcagatacaactacgtcaccagcgacattggccatgttcagactaaa
ggtcgaagccgagccaaatacaacgggaaaatcgtcgtcattgtgaattcggatcttcag
cttcaagaccgtgaacttaagaatatcataagggtgaagatgagcgaacaagctatcaaa
aacgtcgccgatgccgctctcaatgatacaaaagcctttgaagataaaattgctttggta
cagaagaaagatcagaaagagcgacaacgggaaaaggaacttgcacgagccaacaaggca
aagaaagtagagagaacaggcattgtcctccattgcatcaagtgctttcaagaagcctgt
tctctggatgacatcaggtgcatcagaaaccagcatcatgtggttatgaacgacctcttc
cgaggaaagattcagcttgttgatctgaagaagcagcctctgatcgacgaattcaaacac
cagcagaagatccattgtggcaactgccagcataaatggggcaccatggtggtgtaccaa
caagaagagcttccgttgatcgctgtcaagaactttacactgaaagatggaaacggcagg
aaattgtttcccaaatcctggaaggaagtacctttcgtggtccacgccatagatatcaat
gatctgggtaagcagaacaacgaaggtgcagttgctgacccagaagttgcccaggagaac
ggagagatcgaagaagacgatggccccatcgaattctctaacatcatgcaggttgacgac
tag
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