Lactiplantibacillus plantarum JDM1: JDM1_0940
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Entry
JDM1_0940 CDS
T00946
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Pathway
lpj03030
DNA replication
lpj03410
Base excision repair
lpj03420
Nucleotide excision repair
lpj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JDM1_0940 (ligA)
03410 Base excision repair
JDM1_0940 (ligA)
03420 Nucleotide excision repair
JDM1_0940 (ligA)
03430 Mismatch repair
JDM1_0940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpj03032
]
JDM1_0940 (ligA)
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_0940 (ligA)
Enzymes [BR:
lpj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JDM1_0940 (ligA)
DNA replication proteins [BR:
lpj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JDM1_0940 (ligA)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JDM1_0940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JDM1_0940 (ligA)
MMR (mismatch excision repair)
DNA ligase
JDM1_0940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JDM1_0940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Zn_ribbon_NUD
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ACT61827
LinkDB
All DBs
Position
1003402..1005441
Genome browser
AA seq
679 aa
AA seq
DB search
MADKPNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQ
LVTPDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDRLEQNVGHPVDYNCE
LKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLTRPLTIDVRGECYM
PKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPLTAR
TQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPLPLQ
RSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVARAS
LHNPDYVAAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLVIPTTCPSCGAPLVH
LEDEVALRCINPKCPAQVQEGLVHFASRNAMNIDGLGPRIIAQLYANRLVSDVAGLYRLT
KAQLLTLDKIKDKSAEKLLTAIDRSRDNSLERLLFGLGIRHVGAKVARLIAQHFGTIEAL
MAASQEEIAAIDSMGDVIANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDSNS
WFAGKRVVLTGKLESFTRPDATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLD
ITVWDEARFSETMREDAQA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaacccaacacaatgacggttgagcaggcggctgatgaagcggctgcttta
cggcaaacgttaaatgaatggcgtcggcagtactatgacgaagatgcgccgaacgttgaa
gatagtgtgtatgatcaaaagtatgaacggttggtcgaactcgaacaaacttttccacag
ctcgttacaccggattcaccgacgcaattagttggtggaacggttaaagcaggctttgat
aaagtgacccatgagattccgatgttgtcattgggcgacgtcttttcacaagctgagtta
caagagtttgttgatcgcttggaacaaaacgttggtcatccagtcgattataattgtgag
ttgaaaattgatggtttagcgctgtcgttacgttacgaagatggggtgctcgttcaaggg
tccacgcggggtaacggtacggttggcgaagatattacggctaatattaagacaatcaag
tcgattccacaacggttgacccgaccactgacgatcgatgtacgtggggaatgttatatg
cctaaggcagcgtttgctgccttgaatgaacgccgagaagcagcgggagaaccagtcttt
gcgaatccacgcaatgctgcggccggtacgttacggcagctagattcacgagtcgtggcg
gaacgacagctcagcacgtttatgtataacattgccgactacgaaccgttaaccgcccgt
acgcagagtgacatgttaacggagttcgcagatcttggttttgccatcaatcctgacttt
aaggtggcccattcgatggccgatgtctttagttacattgaccattatcaaaatgaacgg
ccagaattagcatatggcattgatggcatcgtgatcaaagctaacccgttaccgctgcaa
cgctcactaggagcgacagtcaaggtgccacgatgggcgattgcctttaagtttccacct
gatgagcagccgacccttttaaaggatgttgaatggaccgttggccgtacaggagtcgtt
acgccaactgcggttatggaacccgttcaactagctgggacgacggttgcgcgggcttcg
ttacacaatcccgattatgtggcggccaaagatgtccgcatcggtgatacggtcttgcta
cacaaggctggcgatattattccggaaatttcatcggttgatttagccaaacgacccaag
gatgcgcaaccattagttattccaaccacgtgtccgtcttgtggggcgccgctggttcat
ttggaagacgaagtggctttacggtgtattaacccgaaatgtccagcacaagtccaagaa
gggctggttcattttgcctctcgcaatgccatgaatatcgatggcttgggaccacgaatc
attgcgcaactctatgcaaatcggctggttagtgacgttgctggtttgtaccgattaact
aaggcacaactgttaacattagataaaataaaagataaatctgctgaaaagctcttgaca
gcaattgaccgtagccgtgataattcacttgaacggttattgttcggtcttggtattcgg
cacgttggtgctaaagtggcgcggttaatcgcgcagcattttgggacgattgaggcgttg
atggcagctagccaagaagagattgcggcgatcgactcgatgggcgatgtgattgcgaac
gcagttgttcaatattttgagagcgacgaagttcatacactcatccgcgaattgcaagca
gtcaacgtgaataccacttatcaaggccctagtgccaccgtggcagaagatagtaacagt
tggtttgcaggcaagcgggtcgtgttaactggtaagctggaaagttttacgaggccagat
gcgactcaatggctacaagctcacggcgccacggttacgggaagcgtctctaaaaagacg
gatctcgtgattgcaggtagcgatgccggaagcaagttgcaaaaagcacagcagctggac
attactgtatgggatgaagcccggttcagcgaaacaatgagggaggatgcacaagcgtga
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integrated database retrieval system
