Legionella pneumophila subsp. pneumophila Thunder Bay: LP6_0946
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Entry
LP6_0946 CDS
T02689
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpm
Legionella pneumophila subsp. pneumophila Thunder Bay
Pathway
lpm03030
DNA replication
lpm03410
Base excision repair
lpm03420
Nucleotide excision repair
lpm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LP6_0946 (lig)
03410 Base excision repair
LP6_0946 (lig)
03420 Nucleotide excision repair
LP6_0946 (lig)
03430 Mismatch repair
LP6_0946 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpm03032
]
LP6_0946 (lig)
03400 DNA repair and recombination proteins [BR:
lpm03400
]
LP6_0946 (lig)
Enzymes [BR:
lpm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LP6_0946 (lig)
DNA replication proteins [BR:
lpm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LP6_0946 (lig)
DNA repair and recombination proteins [BR:
lpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LP6_0946 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LP6_0946 (lig)
MMR (mismatch excision repair)
DNA ligase
LP6_0946 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LP6_0946 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AGN13861
LinkDB
All DBs
Position
1049777..1051798
Genome browser
AA seq
673 aa
AA seq
DB search
MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP
TQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLD
GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP
KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN
SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ
QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT
LHNFDEITRKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNCPVCGSEVVR
EADEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYEL
DLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVES
LKAATIEELMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPF
FGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVA
IIEEDEFLKWVNS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatcaaggaattaaggaatcgatagaaacgcttaaagagcaaataagaaaatac
gattatcactattatgttttagatgaacctttggttcccgacgcggaatatgatcgatgt
ttcaaggcattgcaacagtatgaagagcaatatccgcaatttttatcgccagattctcct
acacagagagtgagcggtactccttcagatgcttttatgccggtagcccataagcaaccc
atgttgtctttgtccaatgtgtttactaccgatgaattaaaagcattcattaagcgagca
attgagaaactggatgaaccaaatcaacaactggtatttgcttgcgaaccaaagcttgat
gggttggctgttaacatgacttatgagggcgggatcttgactcatgccgcaactcgtggc
gatggtgctgtaggagaaaacatcacagcaaatattaagactattgcttcagttccatta
aggctaagggttagtaaccctccaaaattgatcgaagtgcggggtgaagtctatatcccc
aaagccgattttgaagcttacaacgcaagggctagagagctcggtgaaaaaacttttgct
aatccgcgaaatgctgctgcaggcagtttaaggcaattaaatcctgaaatttctgccagt
cgtccacttgctatttattgttatggtataggggcttgtgaggattataagttacctaac
agtcatttggagcaattgaatttattaaaagagtttggatttagagtgtctccagaaacg
aggagggcggttggagtagaaggctgtttagattattaccagtatatgttagcgaaacgg
aatcaattgccatttgaaatcgatggggttgtttataagattgacagtatctccttgcaa
cagcaattaggttatgtttctcgtgccccaagatttgcttgtgcccataaatttcccgct
acagaagaaatgactcgtctgatagccgtggatttccaggtaggtagaacgggcgctgtg
acaccggttgcacgtttggagccagttagtgttggtggtgttactgtgagtaatgcgact
ttgcataattttgatgaaattacccgaaaagacattcgtattggtgatacagttattatt
cgccgtgccggtgacgtgatccctgaagtggtttctgtgattttggaaaagcgtcccgct
aatgccagaatgattgagcttcctaaaaattgccctgtttgtggttctgaagtcgtaagg
gaagccgatgaagcaattgctcgttgtgtcggcggtttatattgtaaagcacaattaaaa
aggatgatgtggcattttgcttctcgaaaagcaatgtatattgaaggacttggcagtgtt
ttaattgaccagttagttgatgagggtattgtccatcatttggcggatctttatgaactc
gatttgcagactttagctaacctgccaaggatgggggagaaatctgcaaaaaacctatta
tccgctttggaaaaaagtaaaaaaacgactttcaatcgctttctttatgctttggggatc
agagaaatcggtgaagccggcgcaagggttttagcggagcactactgcgatgtagagagc
ttgaaagcggcaacgattgaggaattaatgactctgaatgacataggtccagtagcggct
tctcatatagtccatttctttgcccaagcgcataatcttgaagtgattgaccgtcttctc
gagttgggtattcattggccaaagcccgaaaaaatacaggttaatcagcaaaatccattt
tttggtaaaacagtagttttaactggaactctgagtaccatggggagggaagaggcaaag
gcaaaattattagccttgggagcaaaagtaagtggaagtgtgtcttccaaaacggattat
gtagtagcaggaagtgaagccggttcaaagctgattaaagcgacagaactgggagtagcg
attatagaggaagacgagtttttaaaatgggttaattcatga
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