Limosilactobacillus pontis: LP475_06525
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Entry
LP475_06525 CDS
T07022
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpon
Limosilactobacillus pontis
Pathway
lpon03030
DNA replication
lpon03410
Base excision repair
lpon03420
Nucleotide excision repair
lpon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LP475_06525 (ligA)
03410 Base excision repair
LP475_06525 (ligA)
03420 Nucleotide excision repair
LP475_06525 (ligA)
03430 Mismatch repair
LP475_06525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpon03032
]
LP475_06525 (ligA)
03400 DNA repair and recombination proteins [BR:
lpon03400
]
LP475_06525 (ligA)
Enzymes [BR:
lpon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LP475_06525 (ligA)
DNA replication proteins [BR:
lpon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LP475_06525 (ligA)
DNA repair and recombination proteins [BR:
lpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LP475_06525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LP475_06525 (ligA)
MMR (mismatch excision repair)
DNA ligase
LP475_06525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LP475_06525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
UPF0758_N
Hydrolase_6
RNA_pol_A_CTD
RUBY_RBDX
HMBD
Motif
Other DBs
NCBI-ProteinID:
QFV01370
LinkDB
All DBs
Position
complement(1294485..1296524)
Genome browser
AA seq
679 aa
AA seq
DB search
MDKQVPVSQLSLAAAKEEIAPLRKQLTQWGKEYYEQDNPSVEDYVYDRAYQRLVELETRF
PELKSADSPTQRVGGAVTTQLTKVHHDIPMLSMGDVFSVDELMDFNRRQQENGDVTVAPE
YNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVMTIKSIPHQLPEPLTLEFRG
ECYMPKASFVKLNQEREAAGLPVFANPRNAAAGSLRQLDPKVTAKRDLATFMYYVPEYQK
LGVTTQAESLDRMRELGFSVNPNNRVVHSEEEIAVYIDEYTKQRDQLSYGIDGIVEKVND
LATENALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMDPVQLAGTTV
SRASLHNPDYLREKDIRLGDTVYIHKAGDIIPEISRVDLKKRPADSQEYVIPTKCPICGA
ELVHLDDEVALRCINPMCPAQIKEGLAHFASRNAMNIDGLGPKIIQQLWDRKLIHDVADL
YHLTYDQLLTLDKFGDKSANNLLTSIDNSRNNSVERLLFGLGIRHVGAKAAQQIMAHFGN
LDQLMAASADEIAAVDGIGPTIGESVHTYFANPQVVALIDELRDAGINFSYQGPAATVAV
ESDWNGRRVVLTGKLEEMTRGAAKQWLEAHGAKVTSSVSKKTDIVIAGTAAGSKLTRAQD
LGITVWDEARFHQAMQEEE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggataaacaagtaccagtaagccagctcagtctggcggcggccaaagaagagattgcc
cccctccgtaagcagctcacccagtgggggaaagaatactacgagcaggataatcctagc
gtagaagattacgtctacgaccgggcctaccagcgcctggttgaactggagacccggttt
cccgaactgaaatcggcggactccccaacgcagcgggtcggcggggcggtgaccacccag
ctgactaaggtccaccacgatatcccgatgctgtcgatgggggatgttttctccgtggac
gagttgatggacttcaaccgtcgtcagcaagaaaacggcgacgtgaccgtggccccggaa
tacaacctggagctcaagatcgacggcctgtccctctccctggtctacgagaatggaaag
ctggttcaaggatcgacccgcggtaacgggacgatcggcgaggacgtaactgccaacgtg
atgacgatcaaatcgatcccccaccagctccccgagccgttaaccttggagtttcggggc
gagtgctacatgcctaaggcgtccttcgtaaaattgaaccaggagcgcgaggcggcgggc
ctgcccgtcttcgccaacccgcggaacgcggcggcgggtagccttcgtcaacttgaccct
aaggtgacggccaagcgggacttggcaaccttcatgtattacgtgccggaatatcagaaa
ctgggggtgaccacccaggccgagtccctcgatcggatgcgggagcttggcttcagtgtc
aatcctaataaccgggtggttcatagcgaggaggagatcgctgtctacattgacgagtac
accaagcagcgtgaccagctgtcatacgggatcgacgggatcgtggagaaggtcaatgac
ctggccaccgagaacgccctcggcaacacggtcaaggtaccccgctgggagattgcctac
aagttcccaccggaggaacaggcaacgattgttcgggacatcgtctggacggtcggccga
acgggcaacgtgacgccgaccgcggtgatggacccggttcaactggccgggacgacggtc
agccgggcctccctccacaacccagactacctgcgggagaaggatatccgcctcggcgac
accgtctacatccacaaggccggcgatatcattcccgagatctcccgggttgacctcaag
aaacgtccggccgatagtcaggagtatgtgattccaaccaagtgcccgatctgtggggct
gaattggttcacttagacgacgaggtggccctgcgctgcattaacccaatgtgtccggcc
cagatcaaggaggggttggcccactttgcctcccggaacgccatgaacatcgatggcctg
ggaccaaagatcatccagcaactctgggatcgaaaattgatccatgacgtggctgacctt
taccacctgacctacgaccaattgttaactttagataaatttggtgacaaatcggctaat
aacctattgacatcaattgacaatagtcgtaataattctgtcgagcgcttattattcggc
cttggtatccgtcacgttggcgccaaggcggcccaacagatcatggcccactttggcaac
ctggaccagctgatggcggccagcgccgatgagatcgcagccgtcgacggaattggtccg
accatcggcgagagtgtccacacctactttgccaatccgcaggtagtggcactgattgac
gagctccgggatgcggggatcaatttttcctaccaggggccggccgccacggtggcggta
gagagcgactggaacggtcgtcgggttgtcttaaccgggaagctggaagagatgacccgc
ggtgccgcaaagcagtggcttgaggctcacggtgccaaggtaactagcagcgtatcaaag
aaaacagatattgtcattgcgggaacggcggccggcagtaagctgacccgtgctcaggac
ctcgggattaccgtttgggacgaggcccggttccaccaagcaatgcaggaggaagaataa
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integrated database retrieval system
