Lonsdalea populi: I6N93_04880
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Entry
I6N93_04880 CDS
T06954
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
lpop
Lonsdalea populi
Pathway
lpop01501
beta-Lactam resistance
lpop01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
I6N93_04880
01503 Cationic antimicrobial peptide (CAMP) resistance
I6N93_04880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lpop03036
]
I6N93_04880
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lpop02000
]
I6N93_04880
01504 Antimicrobial resistance genes [BR:
lpop01504
]
I6N93_04880
Chromosome and associated proteins [BR:
lpop03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
I6N93_04880
Transporters [BR:
lpop02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
I6N93_04880
Antimicrobial resistance genes [BR:
lpop01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
I6N93_04880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-barrel_RND
BSH_RND
HH_MFP_RND
RND-MFP_C
Beta-barrel_RND_2
HH_CzcB
YknX_C
BSH_CusB
HH_YBHG
HH_EMRA
BSH_CzcB
HH_AAEA_pHBA
Motif
Other DBs
NCBI-ProteinID:
QPQ25129
LinkDB
All DBs
Position
complement(1097903..1099090)
Genome browser
AA seq
395 aa
AA seq
DB search
MNKNRRLLPLAAVLMLSGGLVLTGCDNKDGSQDNAAGSAPAVDIVTIKAQPLNIITELPG
RTNSFRVAEVRPQVGGIILKRNFVEGGDVQAGVSLYQIDPAPYEAQLNSAKGTLAEAQAN
AEVARLTVNRYKPLLGTNYISKQDYDQAVATSRQADATVVSGKAAVDSAQINLDYTKVTA
PISGRIGKSTVTEGALVSSAQTTALTTIQQLDPIYVDVTQSSNDFLQLKNDLKSGTIQVA
NGKANVRLSLENGTEYDQQGTLEFSDVTVDETTGSITLRAIFPNPSHNLLPGMFVRARLD
AGVNQNAILVPQESVTRTPRGDASTLVVGEGDKVEVRSITTAQAIGDKWVVTSGIKPGDR
VIVSGLQKIKPGMVVTAQEVKSDSTQQPQPQPAKS
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacagaaggcttttgcctctggcggcggtgctgatgctttctggcggctta
gtactcacaggatgtgataataaggatggaagccaagacaacgcagcgggaagcgctccg
gcagtagatattgtcaccataaaagcacaacctctgaatatcatcaccgaactgccggga
cgcaccaactctttccgggtggctgaagtccgtcctcaggtcggcggcattatcctcaag
cgtaacttcgtggaaggcggcgacgtccaggctggcgtatcgctgtatcaaatcgaccct
gcgccttatgaggcacagctcaatagcgcgaaaggaacgctggcggaagcgcaggccaac
gccgaagtcgcgcgtttgaccgtcaaccgctacaaacctctgctaggcaccaattacatc
agcaagcaggattacgatcaggccgtcgcgacctcccgtcaggctgacgcaacggtcgtt
tccggtaaagccgccgtagactcagcccagatcaacctcgattacaccaaagtcaccgcg
ccaatttcaggccgcattggcaagtcaaccgtcaccgaaggcgccttagtttcaagcgct
caaacgaccgcactcaccactattcagcagctcgatcccatttacgtggacgtgacgcag
tccagcaatgattttctgcagcttaagaacgacttaaaaagtggcacgatccaggttgcc
aacggtaaagccaacgtccgtctgtcgctagaaaatgggaccgaatacgatcagcaaggt
acgctggagttttccgacgtgaccgtagatgaaaccaccggctccatcacactgcgtgct
atcttcccgaacccttcacacaacctgctgcccggtatgttcgttcgtgcgcgtctggat
gcgggcgttaatcaaaacgcgattctggtgcctcaggaaagcgtcacccgcacccctcgc
ggcgatgcttccacactggtcgtgggtgaaggcgacaaagttgaagtccgctcgatcacc
acggctcaggctattggcgacaagtgggtggtgacttcaggcatcaaacccggcgatcgc
gtgattgtttccggcttgcaaaagattaaacccggtatggtggtgacagcgcaggaagtc
aaatcagacagcactcagcagccccaaccccaacccgccaagtcttaa
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