Lactobacillus paragasseri: LpgJCM5343_15000
Help
Entry
LpgJCM5343_15000 CDS
T05840
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03030
DNA replication
lpw03410
Base excision repair
lpw03420
Nucleotide excision repair
lpw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LpgJCM5343_15000 (lig)
03410 Base excision repair
LpgJCM5343_15000 (lig)
03420 Nucleotide excision repair
LpgJCM5343_15000 (lig)
03430 Mismatch repair
LpgJCM5343_15000 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpw03032
]
LpgJCM5343_15000 (lig)
03400 DNA repair and recombination proteins [BR:
lpw03400
]
LpgJCM5343_15000 (lig)
Enzymes [BR:
lpw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LpgJCM5343_15000 (lig)
DNA replication proteins [BR:
lpw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LpgJCM5343_15000 (lig)
DNA repair and recombination proteins [BR:
lpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LpgJCM5343_15000 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LpgJCM5343_15000 (lig)
MMR (mismatch excision repair)
DNA ligase
LpgJCM5343_15000 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LpgJCM5343_15000 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BBD49147
LinkDB
All DBs
Position
complement(1544555..1546561)
Genome browser
AA seq
668 aa
AA seq
DB search
MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPIVEDAVYDKAYQELVELEKQFPDLVTS
DSITQRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDDRITKLVGHPVAYNVELKID
GLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPLTTEVRGECYMEKEA
FAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPPRNITSQHQA
IDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDLSLQNELGN
TVKVPRWEIAYKFPPEEQETIVKEIEWTVGRTGVVTPTAVMNPVQLAGTVVSRASLHNPD
YLREKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYEIPNKCPSCGQDLVHLQDEV
ALRCINPMCPAQVEEGIIHFASRGAMNIMGLGPRIVKQLIDKKFVNDVADLYHLTNEQLS
QLDHFKDKSITNLLTSIENSKQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLTV
PELISIDTIGETIAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTV
VLTGKLSDFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQ
EAIAKIEK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcagttttaactcacaatcaggcttctcagaaagtcgatgaattaagaaaaaagctc
gatgaatgggcagaagattattacgcaaaagacgcaccaatagttgaagacgcagtttat
gacaaggcttatcaagaactagtagaattagaaaagcagtttcctgacttagtaacatct
gactcaattacgcagcgagttggtggcgaaattaagagtgatctttctaaagtggaacat
cctattccaatgctctcaatgggggatgttttctcaaaagatgagcttaaagaatttgat
gacagaattacaaagctagttggacatcctgtggcttacaacgttgaattaaaaattgat
ggcttatctttatcgctagaatatacagctggtaaattaacacgcgcatctactagagga
aacggtcgtgttggtgaagatgtgacagctaatgccaagttcattaaggatatcccacaa
actttgcctgagcctttaacaactgaggttcgtggtgaatgctatatggaaaaagaagca
tttgccaagctaaatgcggaacgcgatgaaaaaggcgagcaagtatttgctaatcctaga
aatgcagcagctgggtctttgagacaattagatgcgcggattactaaaaagagaaattta
agtacttttatttatacttgggttaatccaccaagaaacattactagtcagcaccaggca
attgatgaaatgaatcgcttaggctttcacactaatcaaactggtcgtcgtctagaatca
atggatgaagtatttaagtttattgatgaatatactgctaagcgtaacgatttaagctat
ggtatcgatggaatcgttttaaaagttgacgatttgagcttacaaaatgaattaggaaat
accgtcaaggtaccgcgttgggaaattgcctataagtttcctcctgaagaacaagaaacg
atagttaaagagatcgaatggacagttggccgaactggagtagtcacgccgactgcggtg
atgaatcccgttcagcttgctggtactgttgtttcacgtgcttctttgcataatcctgat
tacctaagagaaaagggagtacggattggcgatacagttaaattgcacaaggctggggat
attattccagaaatttctagtgtcgttttaaataaaagacctaaagatagtgagccttat
gagattcctaataaatgtccatcttgtgggcaagacttggttcacttgcaagatgaagtg
gctctccgctgcatcaatccaatgtgtccagctcaagttgaagaaggaattattcacttt
gcttcacgcggcgcgatgaacattatgggacttggtccaagaatcgtaaaacagctaatt
gataaaaaatttgtcaacgatgtagctgacttgtatcatttaactaatgagcaattaagt
cagttagatcattttaaagataagtcaattactaatttgttaacttcaattgagaatagt
aagcaaaattcagctgaattattactatttggtcttggaattgatcacgttggtgctaaa
gctgctagattaattttggaaaaatataaaaatttggaaaaggttagtcaattaacagtg
ccagaattaataagtatcgatacaataggagagacgattgcggaatcgttaacagcatat
tttaatcagccgagtgcgcaaaagttgttgcaagagttgcgtgacagtggattaaatatg
gaatatttaggaacagttgaagaagaagcaccagataatttctttaaagaaaagactgtt
gttttaactggaaagttatcagactttactcgaagtgaatttactaagaaacttcaagat
cttggagctaaagtgactggatcagtatctaagaagacagattatctgatctatggtgca
gatgccggctctaagaaagataaggctgagaaacttcaagttccaatgttaactgaacaa
gaagcaattgcaaaaattgaaaaataa
DBGET
integrated database retrieval system
