Lolium rigidum (rigid ryegrass): 124646530
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Entry
124646530 CDS
T09103
Name
(RefSeq) transcription factor APG-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04075
Plant hormone signal transduction
lrd04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
124646530
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
124646530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124646530
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
124646530
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_LHW
bHLH_SAC51
Motif
Other DBs
NCBI-GeneID:
124646530
NCBI-ProteinID:
XP_047042589
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Position
4:527426..529690
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AA seq
501 aa
AA seq
DB search
MLLLRRSQQPGNDLPEFLWQNGPALQRTAAAPFPPFASSAAGTSTSGRATELARQHPASA
TAMRDLLGAPDDDAVPWLHYPVMGGVDDDDSDTAPLPPEYCSTLLSGYPDLPAAVASRDA
GGAPSTSHCAVAVPPPMPEPAVPRHQHQQARPSGEGIMNFTFFSRPLQRAPPPAGERTSA
AAAPSNPVESTVLQASANRLRSTPLFSEQRMAWLQPPKDSRATVAPVPPPPPPPTPPVPI
RQGEASAALAHRVQPEARAPERPPATATTSSVCSDNVDRSQLKRNSSSHQAPEWSVSQED
EDLDDEAGGLRRSASRSTKRGRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASM
LEEAIEYLKTLQLQVQMMSTMGTAGLCMPPMLAMQHMQMQMPPMAHFHHHHLGPMGFGMG
PFDPRLAAAAAGAAQFPYPMIPGMPMFGHGPAMPSPPPFPQHQQAAAAGAQMAAGTVVDN
EAAAQAEQQTSGDHPQVPGAM
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgctgcgtaggagtcagcagccggggaacgacctgccagagtttctctggcag
aacggcccggcgctccagcggacggcggcggcaccgttcccgccattcgccagcagcgcc
gccggcaccagcaccagcggcagggctacggagctcgccaggcagcacccggcgtccgcg
acggcgatgcgcgacctcctcggggcgccggacgatgacgccgtgccgtggctgcattac
cccgtcatgggcggcgtggacgacgacgacagcgacacggccccgctgcccccggagtac
tgctccaccttgctctccggctaccccgacctccccgctgccgtggcgagcagagacgcc
ggaggggcgccgtcgacgtcccactgcgcggtcgccgttccgcctccgatgccggagccg
gcggtccccaggcatcagcaccagcaggctcggccgagtggcgagggcatcatgaacttc
accttcttctcgaggcccctgcagcgcgcaccgccgccagccggcgagaggacgtccgct
gcggccgcgccgagcaaccccgtggagtcgacggtgctgcaggcgtcggcgaaccggctg
aggagcaccccgctcttctccgagcagaggatggcgtggctgcagccgcccaaggactcg
cgcgccacggtggcccctgtaccaccacctcctcctccgccgacgccgccggtccctatc
cggcagggagaagcgtctgcggcgttggctcacagagtacaaccggaagcgagggctccc
gagaggccgcccgcgacggcgacgacctcgtcggtctgctccgacaatgttgaccggagc
cagctgaagaggaacagcagcagccaccaggctccggagtggtcggtcagtcaggaggac
gaggatcttgacgatgaggccggcgggctgagaaggtcggcgtccaggagcaccaagcgc
ggccgcaccgccgaagtgcacaacatgtcggagcggaggagacgggatcggatcaacgag
aagatgcgcgccctgcaagaactcatccccaattgcaacaagattgacaaggcgtcgatg
cttgaggaagccatcgagtacctgaagaccctacagctccaggtgcagatgatgtcgacg
atggggacggccgggctgtgcatgccaccgatgctggcaatgcagcacatgcagatgcag
atgccgcccatggcgcacttccaccaccatcacctcggccccatggggttcggcatgggg
cccttcgacccgcgcctcgccgccgccgccgctggtgcggcccaattcccatacccgatg
atccccggcatgcccatgttcggccacggccccgcaatgccttccccgccgccattcccc
cagcaccagcaggcggctgctgcgggcgctcagatggccgccggcaccgtcgtcgataac
gaggccgccgcccaggccgagcagcagacgtcgggcgaccatccgcaggtcccaggagca
atgtag
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