Lolium rigidum (rigid ryegrass): 124651548
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Entry
124651548 CDS
T09103
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrd03036
]
124651548
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124651548
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
124651548
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
124651548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
CRISPR_Cas9_WED
SMCHD1_S5
Motif
Other DBs
NCBI-GeneID:
124651548
NCBI-ProteinID:
XP_047046576
LinkDB
All DBs
Position
1:128953160..128976936
Genome browser
AA seq
1680 aa
AA seq
DB search
MASRGSGNWALVEHQHHSRASRVYRFQILLPNGTSTGLTLKDPGEEMPLHDFLDHIRTEL
EDVPMDGDDRRGIDWSGDVYLEDLLDRKIHKELQFSDFLTNSTNILRLQDGEGFVRTFEN
MWDLTPPTELLQELPAEYSTESALADLIDNSLQALWSNGKKDRKLIRITIDQEKMVIFDT
GRGMDGSDENSISKWGTIGSSNHRVFRAKGIGGKAPYLVPFFGMFGYGGTIASMHLGRRA
IVSSKTKESRKVFTLHLSREALLAKSSSKLSWKTAGGVRDPSEEELTLSPHQSFTQVEIQ
GLNRCLEAAKLQRFLKDIYFPYIQYDEDNGSMNTRRPVQFEVNGVDLAEILENEVTVTNL
HSCAGPSFILDVTFSCTSTTAGNIFEAHARIKCVYFPIVKGKESIDSILEMLRENASGVK
ENFDNFSRVSIRRLGRLLPDARWGPLPFMEPKQSKGKKAELLKRCCKRVKCFVDLPTSSG
KHFKEERSSKVASCSGDQLRETQAVINCHIDSLPTLSTESADLRRENGSLNMFKIQLVDF
AGRETGAPTVGPNVFLFGIDIGSSLAHKEIEVLKFLESLGGQRKMKNINGVIQTDLAQHD
LFTKALRCLDGSSRSDSSVEDVNVDVRRGGRSLNFTQLEKQYHDWINNMHAQYDVEIDEG
DNDHTVIINPSNKDRLGISEDVQVIRVYTSVRRKGKTWKRGDHLKIQPGVLARLKNNFLS
LKTIFYATLEYVVGEGLAGDICGEARLICRSIEFSDKQGCLLEEGPDSMCLNIQESVSFP
ISMIDNDKCHTMGNDSWRQILGKKKEKAPACIEVLRNLQGSDLTIERGLPFEKVIMAGYK
HPREIIAVILPQCATTCSTSPLDKRYILKDDEIEMEMDINHLPGSKKDHLRANCIYRKLK
KPSSRDSINGLYIFQLSEDSSIFTKSGVYQFIFSVRCKDSSIITHETEITVCPNSNTRRW
QLSSVADCSAGNAVVNIRLGVPVRCLGVRSHDSYGNAIPFQDIRKAVITIVDGNYILAQV
EDIEVELSSDSMTLNIRDFLFKSSKLDIIRPKYEAMLKISLSDNEFSHLCPCKVMPGLPS
TINMDMCLAWEKNLTPGEVIDDALLEVFDHCGNHVEEGTELIVEIVGFSFVDKHGHVRKV
NSEGFVDLSGLLRVINGFGSQACLKIFHHEKEIFATTFQISIRNLEAVEVPQSCQAGTLL
ENIIFEVFDSNGLIDESIHGPLHTLSIRSNEKLVEGAQYTFERGRCIVSRVPVPREPGTV
TFVAYHTHFPDLETTIQIPVYTLDLVPVKGENESEPICSYPTSSVSSQNTIPPSQLVLSQ
SNSLASNILGKFSDEIQEIDSEICSQEVLIKAFDSRKKTLENDIVNLQDEISHTAGSATG
AKELTRHKIEENVGTAAAVLCTLSSRQCLMDDVVGIVALLGTVADRKMSRMLSLYLGEDN
MLAVVCKTQAAANYFEKYAADGSVDVHFGIHQEAANLGAPIRKRFPIICLDLIRPYTGGL
HLNTKQKPLALPFPHSKGFRGFAVNMIDLSPESLTIVTDGYGLRETLFYRLFGELQVYET
REDMWQAIHHLKNGAISLDGGIIKGDGMLILGYSDPEVTFPVVPRSALDVEEDDSEYVCN
KIKTMHAQMGVVKTLENRIRAAEEQKQKLVMERNERKRKFDEISEVLSQPSGSGDHQLYE
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcagaggatctggaaactgggctttagtagagcatcaacaccacagccgggca
agcagagtgtaccgctttcagatcctgttgccaaatggcacgagcactggcctcactctg
aaagatcctggagaggagatgccgcttcatgatttcttagatcatattagaacagagttg
gaggatgtccccatggatggtgatgacaggcggggaattgactggagtggcgatgtttat
ctagaggacctactggacagaaagatacacaaggaattgcagttcagtgattttctcacc
aacagtactaatatattaagactccaggatggtgaaggctttgtcagaacatttgagaat
atgtgggaccttacacctccaactgaactgctccaagagcttccagcagagtatagcact
gagagtgctctcgcagaccttattgacaactcattacaggctttatggtcaaatggtaag
aaagatagaaagctgatcaggataactattgaccaagagaagatggtgatttttgatact
ggtagggggatggacggttcagatgagaattctatctctaaatggggtacaattggttct
tctaaccacagagtatttcgggcaaaaggtattggcgggaaagcgccatatttagtgcct
ttctttggcatgtttggctatggtggaactattgcgtcgatgcatcttggaagacgtgcc
atagtttcatcaaaaacgaaggaatcaaggaaagtgtttaccttgcatctttcgagggag
gctctgttggcgaagtcctcgtctaaacttagctggaagactgctggaggagttagggat
ccatctgaagaagagttgacattgtcgccacatcaaagttttacccaggtggaaatccag
ggcttgaataggtgcttggaggcagccaaacttcaaagatttctgaaggacatttatttt
ccatacatacagtacgacgaggataatggatctatgaatacaaggaggccggttcagttt
gaggtgaatggtgtagatctagcagaaatactggaaaatgaagtgacagttactaatttg
cactcttgtgctggtcctagttttattcttgatgtaacattttcctgtacttcaacaact
gcaggtaacatattcgaagcccatgcacgaatcaagtgtgtttactttccgattgtcaag
ggaaaagaatctatcgactctattttggaaatgttaagagaaaatgcctcaggggtaaaa
gagaactttgacaatttttcacgtgtgtcaatccgccgacttgggcggttactccctgat
gctagatggggccctcttcctttcatggaacctaaacaaagcaaaggaaaaaaagctgaa
ctcctgaagcgatgctgcaagagggtgaaatgttttgttgatcttccaacaagcagtggc
aaacacttcaaagaagaaaggtcttccaaagttgcatcttgcagtggtgaccaactgagg
gagacccaggctgtcattaattgtcatattgatagcttgccaacattgtctactgaaagt
gcagatctaaggagagaaaatgggagcctgaatatgttcaaaattcaacttgtagatttt
gctggcagagaaaccggcgccccaactgtaggaccaaacgtctttctcttcggcattgat
attggctctagtttggctcacaaggagattgaagtcctgaaattcctcgaaagcttgggt
ggacaaaggaagatgaaaaacatcaatggggtcatccagactgatttagcacaacacgac
ctttttaccaaggcacttcgctgcttggatggcagttctcgtagtgacagctcagttgag
gatgttaatgttgatgtccgtagaggcggaagatcactaaattttacccagttggagaag
cagtatcacgactggattaataatatgcatgcacagtatgatgtggaaatcgacgaaggt
gacaacgatcataccgttattatcaacccaagcaacaaggaccgacttggaatatctgaa
gatgtccaagtcattagagtttacacctcggtcaggaggaaagggaaaacatggaaaaga
ggagatcatctgaaaatccaaccaggagttcttgcacgactgaaaaataatttcctctca
ttgaaaaccatattctatgcaacattggagtatgttgttggtgaaggacttgcaggagat
atttgtggtgaagctcgacttatatgcaggtctattgagttctctgataagcaaggttgc
ttacttgaagaaggtcctgatagcatgtgccttaacatccaagaatctgtctccttccct
atcagcatgatagataatgataagtgtcacaccatgggaaatgattcttggcggcaaata
cttgggaagaaaaaggagaaggctccagcatgtattgaagtcctaaggaatttgcaaggc
agtgatctcactatagaaaggggtctaccatttgaaaaagttataatggctggttataaa
catccacgtgaaattatagctgtaatcctaccacagtgtgcaactacttgctccaccagc
ccccttgacaagagatatattctgaaggatgatgagatagagatggaaatggacattaat
catttgcctggaagtaaaaaagaccatctccgtgcaaattgtatttataggaagctcaag
aagccctcatcgcgtgatagcataaacgggctgtatatctttcagttgagcgaagattca
agcatctttactaaatctggtgtttaccaatttatattctcggttaggtgcaaagattca
agtatcattacgcatgaaacagagataacagtttgtccaaactccaatactagacgttgg
caactatccagcgttgctgattgttctgctggcaatgctgtagtaaatataaggcttggg
gtgccagttagatgtcttggagttagaagccatgattcgtatggaaatgcaattcctttc
caagatatacgtaaggctgtcataactatagttgatggtaattatattctggcccaagtt
gaggatatcgaagtggaactctcatcagattcaatgactctgaatattagggacttcctg
ttcaaaagcagcaaattggacataataaggccaaagtatgaagcgatgttaaagatatct
ttatctgataatgagttctctcatctatgtccatgtaaagttatgccaggtcttccgtca
accattaacatggatatgtgccttgcctgggagaagaatttaactcctggggaagttatt
gatgatgcccttctagaggtgttcgaccattgtggtaatcatgttgaagaagggacggaa
cttattgtcgaaattgttggattctcatttgtagataaacatggacatgttcgaaaggta
aatagtgaagggtttgttgacctaagtggactacttagagttattaatggatttggttca
caagcttgtttgaagatttttcatcatgagaaagagatttttgctacaacatttcagatt
tctatcaggaatttggaagctgttgaggttccacaaagttgtcaagctggcaccttattg
gagaacattatatttgaagttttcgacagcaatggactgattgatgagtcaatacatgga
cccctccatacactgagcatcaggtcgaatgaaaaacttgtggaaggagcacaatataca
tttgaacgtggaagatgtattgtttctcgtgtgccggttcctcgtgaaccaggaacagtc
acttttgtggcataccatacacattttcctgacctagaaacaacaattcagattcctgtt
tatactcttgatttggtgcccgtcaaaggggagaacgaatctgaacctatatgcagctac
ccaacttcatctgtatcaagtcaaaatactatacctccaagtcaactggttcttagtcaa
tctaacagtcttgcttcaaacattctggggaaattttctgatgagattcaagaaattgat
tctgagatatgctctcaagaagttctgattaaagcttttgattctcgtaagaaaacattg
gagaatgatattgtcaatctgcaagatgagattagccacacagctggatcagccactggt
gcaaaagagttgactcgtcataaaattgaagagaatgttggtactgctgctgctgttcta
tgcactctctccagcagacaatgtttgatggatgatgttgtcggtattgttgctcttctc
ggaactgttgcagacagaaaaatgagcaggatgctttctctgtatcttggtgaagacaac
atgctagcagtggtttgcaagacacaggctgctgctaattactttgagaagtatgccgct
gatggaagtgtggatgtccactttggtattcatcaggaggcagctaacctaggagctcct
ataagaaagagatttcctatcatttgcctcgatttaataaggccatacactggaggcctc
catttgaacacaaagcaaaagccgctagctctgccgtttccacattccaagggatttcgt
gggtttgcggtgaacatgatcgatctttccccagagagtttgacgatagtcacagatgga
tatggtctccgtgaaaccttattttataggctctttggagagcttcaagtctatgaaaca
cgcgaggatatgtggcaagccattcatcatctgaagaatggggctatatctttggatggt
gggattataaagggtgatggcatgctgatccttggatacagtgacccagaggtgactttt
cctgttgtcccacgtagtgctctggacgttgaggaagacgactctgaatatgtgtgtaac
aaaataaaaacgatgcatgcacagatgggtgttgtaaaaactttggagaacaggataaga
gcagcagaagagcaaaagcagaaattggtgatggagcgcaacgagagaaaacgtaagttt
gatgagatatcggaggtactgagccagcccagtggcagtggcgaccaccagctttatgag
taa
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