Lolium rigidum (rigid ryegrass): 124664805
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Entry
124664805 CDS
T09103
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
KO
K12126
phytochrome-interacting factor 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04075
Plant hormone signal transduction
lrd04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
124664805
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
124664805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124664805
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
124664805
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Gene cluster
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
124664805
NCBI-ProteinID:
XP_047058199
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Position
6:208949622..208952536
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AA seq
563 aa
AA seq
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MSDGNEFAELLWENGQAVVHGRRKHPQPAFQPFGTGSSGVQEKHPGGDSMLAFTKAGNLF
GATGMAPSLHDFSSGLHASHAHANGDDDTVPWINYPIIEDDDSAAPALTTADYCSDFFSE
LQEAAAAAATANLGSLPPSNPNATNNRAAPVASSSRAPFKEFHDLSAPSTRPTSQPQAPD
LAAAKQPRPGGSAEGVMNFSLFSRPAALARATLQSVQRPQGTDKVSNITTSNPMESTVFQ
TTSGQRSDPMFADQRSVWQHPKDVRFASAAAPVGNLQQIIAREKVSNNTAVHKDAATRAP
EATVATSSVCSVANGAANDERWRQQKRKAQAECSASLDEDLDDESGAALLRSASRSMKRS
RTAEVHNLSERRRRDRINEKMRSLQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMG
TGLCIPPMLLPPAMQHLQLSQMAHFPHLGMGLGYGMGVFDMNSTGSIPMSAMPGAHFPYQ
MIPGAAPQGIGIPGVNAMPMFGVPGQAIPSSGSSVPPFTSLAGVPVRPNLAPQVSGAMPN
MVHEQQQGIASPQQHNLNKEAKQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacggcaacgagttcgccgagttgctgtgggagaacgggcaggcggtggtgcac
gggcggcggaagcacccgcagcccgccttccagccattcggcaccggcagcagcggagtc
caagaaaagcaccctggtggcgacagcatgctggccttcaccaaggccggcaacctcttt
ggtgccacaggcatggctccatcactccatgacttctcctccggcttacacgccagccac
gcccacgcgaatggggatgacgacaccgtcccatggatcaattaccccatcatcgaggac
gacgacagcgccgctcctgctctcaccacggctgactactgctcagactttttctcggag
ctccaggaggcggcagcggcagcagcaacggccaacctcggctctctgccaccttctaat
cccaacgccaccaacaatagagctgctccggttgccagcagcagcagagcacccttcaag
gaattccatgacttgtcggctcctagcacccggccgacttcccagccacaggcgccagat
cttgctgctgccaagcagcctcggccaggcggcagcgccgagggcgtgatgaacttctcc
ctcttctcccgaccagcagccctggcaagggcgacccttcagagcgtgcagaggccacaa
gggaccgacaaggtgtccaacatcaccaccagcaaccccatggagtccacggttttccag
acgaccagtgggcagaggagtgaccctatgttcgccgatcagaggtccgtgtggcagcat
ccaaaggatgtgcggtttgcgtcggcagctgcaccggtcggtaacctacaacagataata
gctcgtgaaaaagttagcaataatacggctgtgcacaaggatgcggcaacaagggcgcca
gaggccactgttgccacttcctcggtgtgctctgttgccaacggtgcagcaaacgatgaa
cgatggcgccagcagaagcgaaaggcccaggcagagtgttcggctagtctagatgaagat
cttgacgatgagtccggagcagcgttgctaagatctgccagcagaagcatgaaacgcagc
cgcaccgcggaggtccacaatttgtcagaaaggaggagaagagacaggatcaacgaaaaa
atgcgctctctccaagagctcattcccaactgcaacaagatcgacaaggcctcaatgctg
gatgaagctatagagtacctcaaaactcttcagcttcaagttcagatgatgtccatggga
actgggctatgcattccacctatgctgctaccaccagccatgcagcacttgcaactttct
caaatggctcacttccctcatcttggcatgggactggggtacgggatgggtgtcttcgac
atgaacagcacaggatcgattccgatgtcagccatgcctggcgctcactttccttaccaa
atgatcccaggtgcagccccacaaggtattggcatccctggtgtaaacgccatgccaatg
tttggagtccctgggcaagcaatcccttcatcagggtccagtgtaccaccatttacatcc
ttggctggtgttcctgttaggccaaacctagcccctcaagtctctggagccatgcctaac
atggtgcacgagcagcagcaaggcatagcgagtccgcagcaacataatctgaacaaggaa
gctaaacagtga
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