KEGG   Lolium rigidum (rigid ryegrass): 124675673
Entry
124675673         CDS       T09103                                 
Name
(RefSeq) ATP-dependent helicase rhp16
  KO
K15083  DNA repair protein RAD16
Organism
lrd  Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lrd03400]
    124675673
DNA repair and recombination proteins [BR:lrd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NER4 complex
      124675673
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_5 zf-RING_UBOX zf-RING_2 ResIII zf-C3HC4_4 RING_XB3-XBAT31 Prok-RING_4 zf-Nse zf-RING_6
Other DBs
NCBI-GeneID: 124675673
NCBI-ProteinID: XP_047067702
LinkDB
Position
7:246669397..246678369
AA seq 848 aa
MPRRTGNASGEGSSRRRRRDDDDDSDHESVPSDNTSDSDFVADTEDEAGDDDDDFASDQD
VAPAPAPAAVPVVVAAPLSLVLPPRPRKEKRRAKKKRKGEADEDGPRLPWKEWEEANAKW
LDARDEAAAAAAAPDDSAPTALPTAEAAPEVLLSLLRFQKEWLAWALAQEASVSRGGILA
DEMGMGKTIQGIALVLTARALRAPPSPSHAPTMRRVGCTLVLCPNVAVIQWVQEIEKHTA
KGSVRVLQYTGAKRAISKPDFNKYDFVVTTYNTLEADYRRHIMPPKIRCQYCNKLFYPDK
MKVHLTYFCGPDALRTEKQAKQKSKSWGDKKRVRKGKKSGGVDDEDDLEELEELSTQSRG
KSPLHVVRWERIILDEAHNIKDRRCNTARAVFALESEYKWALSGTPLQNRVGELYSLIRF
LQIFPYSNYFCKDCDCEILDTQMKKKCDCGHSSVRHFCWWNKYIATPILHGSASFEGRRA
MTLLKEKVLKGIVLRRTKIGRAADLALPTKTVTLRRDSFDKNEMEFYEALYTQSCTQFDS
YVVAGTLLNNYAHIFDLLTRLRQAVDHPYLVAYSQTAVLREECKKEGNGATEMQCGICDD
LAKDFVVTSCDHVFCKTCLLDYAATLENVTCPTCSIPITVDFTTESSREKVPANMKGSKR
SGILGRLQSLADFKTSTKIDALREEIRNMIERDGSAKGIVFSQFTSFLDLIEFSLQRSGI
KCVQLNGRMNLVEKGRAIDTFINDPDCRIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV
ESQAQDRIHRIGQFKPIRSMRFVIKDTVEERILQLQEKKQLVFDGTVGDCQEAMAKLTEA
DLKFLFQN
NT seq 2547 nt   +upstreamnt  +downstreamnt
atgcctcgccgaaccgggaatgcatccggtgaaggcagcagtcgtcgccgccgacgcgat
gacgacgacgactcggaccacgagagcgtcccctccgacaacacatccgactccgacttc
gtcgccgacacggaggacgaggcgggggacgacgacgacgatttcgcctccgaccaagac
gtcgcccccgcgcccgcgcccgcggcggttcccgtggtggtggcggcgcctctctcgctg
gtgctgccgccgcggccgcgcaaggagaagcggagggcgaagaagaagcggaagggggag
gccgacgaggacggcccgcgcctgccgtggaaggagtgggaggaggccaacgccaagtgg
ctcgacgcgcgcgacgaggcggcggcggcggcggcggcgcccgacgactccgctcccacc
gcgctgcccaccgcggaggcggcccccgaggtgctgctcagcctgctgcgcttccagaag
gagtggctggcctgggcgctggcgcaggaggcctcggtctcgcgcggcggcatcctcgcc
gacgagatggggatgggcaagaccatccagggcatcgcgctcgtcctcaccgcgcgcgcg
ctccgcgccccgccctcgccctcacacgcccccacgatgcgacgggtcgggtgcacgctg
gtcctctgccccaacgtggccgtcatccagtgggtgcaggagatcgagaaacacacggct
aagggcagcgtgcgcgtgctgcagtacaccggcgccaagcgggccatttccaagcctgat
ttcaacaaatacgacttcgtcgtcactacatacaacaccctagaggccgactaccggagg
cacatcatgccacctaagattcggtgccaatactgcaacaaactcttttaccccgacaag
atgaaggttcacttgacatacttctgcggacctgatgccctgcgtactgagaagcaggcc
aagcagaagagcaaaagctggggtgacaagaaacgggtgaggaaggggaaaaaatcgggt
ggtgtcgacgacgaggacgatcttgaggaattggaagaattgagcacccaatctaggggc
aagtcccctctgcacgttgtgcggtgggagcggattatcttggatgaggctcacaatata
aaagatagacgatgcaatactgcaagggcagtttttgctttggagtcggaatacaagtgg
gctctgagtgggacaccattgcagaatcgcgttggagaactttactcactgattcgcttc
ttgcaaatctttccctactcgaactatttctgcaaggactgtgactgtgagatactagat
acccaaatgaagaaaaaatgtgactgtggtcactcatcagtcaggcacttttgctggtgg
aataagtacatagcgacaccgatactacatgggtcagcgagttttgagggccgcagagcc
atgactcttctcaaggaaaaagtcttgaagggcatagtgttaaggcggacgaaaataggc
cgagctgcagatcttgctcttccgacaaagactgtgacactgaggcgggactcttttgat
aaaaatgaaatggaattttatgaagcattgtatactcaaagctgcacacagtttgattcg
tatgttgtcgctggaacgctgcttaacaactatgctcacatctttgacctcctcacaagg
ctgagacaggctgtagatcatccataccttgtcgcatattctcagacagcagtacttcgt
gaagaatgcaaaaaagaaggaaatggtgccacggaaatgcagtgtggaatatgtgatgat
ttggcaaaagatttcgtggttacgtcttgtgatcatgtattctgcaagacttgtttgttg
gactacgctgcaactttggagaatgttacatgtccaacttgttcaatacccattactgtt
gactttacaactgaaagctcgagagaaaaggtccctgcaaatatgaagggtagcaaacgc
tcaggcatattaggcagactacaaagcctagcagatttcaagacgagtacaaaaattgat
gccttgagagaagagataagaaacatgattgagcgtgatggttcggcaaaagggattgtg
tttagccagttcacctcattcttggatttgattgaattctccctgcagaggtctggcatc
aagtgcgtgcaactaaatgggaggatgaacttggttgaaaagggcagagctatagacacc
ttcataaatgacccagattgcaggattttcctgatgagcctgaaagctggaggagtagct
ctaaatcttaccgtagcatctcatgttttcttgatggacccttggtggaacccggcagtc
gagagccaagcgcaagatcggatccaccgaattggacaattcaagcctatcagaagcatg
aggtttgtgatcaaggacacggttgaagagcgcatcctgcaattgcaagagaagaagcaa
cttgtgttcgatggcactgtgggtgactgtcaggaggccatggcaaagcttacagaggct
gacctgaagttcctgttccagaactaa

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