Lolium rigidum (rigid ryegrass): 124680709
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Entry
124680709 CDS
T09103
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124680709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124680709
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124680709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
ATP-synt_ab
AAA_29
Arf
AAA_15
nSTAND3
AAA_28
AAA
AAA_25
AAA_23
ORC-CDC6-like
Zeta_toxin
AAA_24
VapE-like_dom
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
124680709
NCBI-ProteinID:
XP_047071718
LinkDB
All DBs
Position
Unknown
AA seq
311 aa
AA seq
DB search
MAPTVEIRNLTFTYPGIDGKPPPGAPPLIEDVCFTLQAGQRCLLVGSNGAGKTTILKILG
GKHMVDPSMVRVFGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVTDVDPQRRDELIKILDIDLGWRMHKASDGQRRRVQICMGLLKTFKVLLLDEITVDLDV
LARANLLTYLKKECVERGATIIYATHIFDGLDDWPTDIVYIAHGKLQLALPLEKVKETSQ
LSLMRTVESWLRKERDEDRRKRKERKEKGLPAFDKVIEGSRVINNGWAAGRLTSTMAGEE
SFFLSSNSVLR
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggtggagatcaggaacctgaccttcacctacccgggcatcgacgggaag
ccgccgcccggagcgccgccgctcatcgaggacgtctgcttcaccctccaagccggtcag
cgctgcctcctcgtcggctccaacggcgcaggcaagacgacgatactcaagatactaggc
gggaagcacatggtggatccgagcatggtgcgggtctttggcaggtcggccttccacgac
acggcgctcacctcctccggcgacctctgctacctcggcggcgagtggaggcgcgatgtt
gccttcgcgggctaccaggtgaacatacagatggacatttccgcggagaagatgatattc
ggtgttactgacgttgatcctcagaggagagatgaacttatcaagattttggatattgac
cttggttggcgcatgcataaggcatcagatggtcagaggagaagagtccagatttgtatg
ggacttctcaagacattcaaggttcttcttcttgatgagatcacagttgaccttgatgtg
ttggcaagagcaaatctattaacatatctaaagaaggaatgtgtggaacgaggtgcaact
attatctacgccacccatatcttcgatggcctggatgattggccaactgatattgtttac
attgctcatgggaagttgcaactagcgctccctttagaaaaggtgaaagaaacgagccag
ttatcgctcatgagaacagtggagagctggctgaggaaagagagggacgaggacagaagg
aagagaaaggagcggaaggagaaaggcctcccagcatttgacaaggttatcgaggggagc
agggtaatcaacaacggttgggcagcaggaaggctcacctccaccatggcaggcgaagag
agcttctttctcagctcaaacagcgttcttcggtag
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